Weissella coleopterorum: G7084_00370
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Entry
G7084_00370 CDS
T07450
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wco
Weissella coleopterorum
Pathway
wco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G7084_00370 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wco03400
]
G7084_00370 (mfd)
Enzymes [BR:
wco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G7084_00370 (mfd)
DNA repair and recombination proteins [BR:
wco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G7084_00370 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
CarD_TRCF_RID
TRCF
Helicase_C
ResIII
UB2H
RecG_dom3_C
MFD_D3
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIL49912
UniProt:
A0A6G8AY83
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All DBs
Position
complement(52785..56303)
Genome browser
AA seq
1172 aa
AA seq
DB search
MILSEFLTDNPKYHELVQAIQAGGNHVLTGLTGSARSVYLSGLNQSLKQPMLLVTDSQFH
AQQLAEDLIGLLGEERVIYFPAEETLSAQISLASLDTILARVTALERLRNDQQPIIVTGY
AGVNQFLPDLGKFERAAIKIDFNQSYQLDQLQASINTMGYHRVDAVQSPGEFSIRGSIID
IYPLNYENPIRMDFFDTDLDSLRTFDVETQKSLEQLTTVQLLPVTDLIADEQDLNQAQLK
LELALTQARDHLEGAAKRHLTEAVQPLLTALEQGTVLPEMRQYLAYLYPAQTTILDYLPQ
QGVVIYDDYPRMLENAKQAQADSMEWWADRLEQNQILPYVEQDVNFEQIIQNDQHANLIL
SPMGRGVSGLKQNSLTNLVIRPTQQFYNQMPMVQAEVTRWQRQNYTIIFLTNTAERQAKL
EQTLTDFKVGVNTVAPDQLVLNRTQLTTLPLHEGFEIPLLKLVVLTEKELFKTITKKAPR
RQTLSNAERIKSYNELKVGDFVVHVNHGIGIYEGITTLETKGVKQDYITIQYRGSGKVFI
PVSQLDLVQKYVSAGEKAPKLNKLGGTEWVKAKRKVAARVEDMADELLQLYAEREAKRGF
AFAEDDAEVQRFEAAFPYPETADQLQATQEIKKDMEKIQPMDRLLVGDVGFGKTEVAFRA
AFKAVHEHKQVAMLVPTTILAEQHFESMQVRFDGFDVKIAMLSRFQSAKEVKTIVQALQD
HEIDMIVGTHKLLGKSIEFADLGLLIIDEEQRFGVKHKERLKQLKTDVDVLTLTATPIPR
TLNMAMVGARDLSVLETPPANRFPIQTYVMEQNGREIAMAIEREMARGGQTFYLHNRVDD
IEKTRLYVESLVPDARVAIIHGRMTEVQLEGILFDFIHGDYDVLVTTTIIETGVDIPNAN
TLVVESADRMGLAQLYQIRGRVGRSNNLAYAYFMYPANRTLTEVSEHRLEAIRDFTELGS
GFKIAMRDLSIRGAGDLLGSQQHGFINTVGYDLYTQMLQEAVAAKQGKEKAKVQTDAEIN
LDVEAYLPEKYVPGGASKIELYQRISRAKVANDLVEIEEDLLDRYGELPMAAHYLLAIAE
LKRLADLVGVSKIIRDKVRTEIIHVFFTPQANLRQVDWLVALKQGRLRGQAIAMQPAQID
VVIQPKMTQDNWLDGLKIFLEAFNATQEKGAK
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgatactatcagaatttttaacagacaatccaaaatatcatgaactggtgcaagcaatt
caagctggtgggaaccatgttttgactggcctaacgggaagtgcgcgatcggtttattta
agtggattgaatcaatcgttaaaacaaccaatgttattggtaacggacagtcaattccat
gcccaacagttggcagaagacttaataggtttattgggcgaagaacgcgtaatatatttt
ccggcagaagaaacattgagtgctcaaatttccctggcgtctttggatactattcttgct
cgtgtgactgctttagagcgattaagaaatgaccaacaacctatcattgtgacgggttat
gcgggtgtgaatcagtttttgccagacttaggtaaatttgagcgcgcggcaattaagatt
gattttaatcagagttatcaactcgatcaactgcaagctagtatcaatactatgggctat
catcgagtagatgcggtacaatctccgggtgaattttcgattcgaggatcaattattgac
atctacccactaaattacgaaaacccaattcggatggatttttttgatacggatttagac
tctttgcggacatttgatgttgagacccagaaaagtctagaacaattaacaacggttcag
ttactacctgtgactgatttaattgcggatgaacaagatttaaaccaagcacagcttaaa
ttagagttagctctaactcaggctcgcgatcatttggaaggtgccgcaaagaggcatcta
actgaagctgttcagccattattgacagctttagaacagggaaccgttctaccagaaatg
cgccaatatttggcatatctataccccgcccagacgacaatactagattatttacctcag
caaggggtagtgatttatgatgattacccacgtatgttggagaatgctaagcaggctcag
gcggatagcatggagtggtgggccgatcggttggaacaaaaccaaattttaccctatgtt
gaacaagacgttaattttgaacagattattcaaaacgatcaacatgccaatctgatttta
tcgccaatggggcgaggtgtgagtggtttgaaacaaaattccttgacgaatttagtgatt
cgtcccacccaacagttctataatcaaatgccaatggttcaagctgaagtaactaggtgg
caacgccaaaattatacaattatctttttgacgaatacagcagaacgtcaagcgaaatta
gaacaaacactgactgattttaaagtaggtgttaatacagtggcgcctgatcagttggtc
ttaaatcgaacacaattaacaacattaccattacatgaaggctttgaaattccattatta
aagttggttgttttaactgaaaaagaattatttaagacgatcaccaaaaaagcacctagg
cgccaaaccctcagtaatgcagagcgcattaaaagttataacgaattgaaggttggagat
tttgtagttcatgttaaccacgggattggaatttatgagggtattacgactttagagact
aagggcgttaagcaggattatataacgattcagtatcgaggatcgggaaaagtatttatt
cctgtctcgcaattggacttggttcaaaaatatgtgagtgctggggaaaaagcacctaaa
ttaaataaactaggtggaactgagtgggttaaagccaaacgtaaggtggcagcacgtgtt
gaagacatggcagatgagttgctacaattatatgcagagcgggaggcgaagcgtggcttt
gcttttgctgaagatgatgcagaagtgcagcggtttgaagcggcatttccttatccagaa
acggctgatcaattacaggcgacgcaagaaattaaaaaagatatggaaaaaatccaacca
atggatcgtttattagttggtgatgttggatttggaaaaacagaagtggcttttcgtgcg
gcttttaaagcggttcacgagcataaacaggtcgccatgttagtaccaacaacgattttg
gcagaacagcattttgaatccatgcaagttcgttttgatggattcgatgttaaaattgcc
atgttatcaaggtttcaatcagctaaagaagttaagaccattgtgcaagcactacaagat
catgagattgatatgatcgttggaacacataagttgcttggaaaaagtattgaatttgcc
gatctaggattattaattattgatgaagaacagcgttttggggtgaaacataaagagcgt
ttgaaacaattgaaaactgatgtagatgttttgacgttaacggcgactcccattcctaga
acattaaatatggcaatggtaggagctcgtgatttatcggtgttagagacaccgccagca
aatcgttttccaatccaaacttacgtaatggagcaaaatggtcgtgaaattgcaatggcg
attgaacgtgaaatggcacgtggtggtcaaactttttatttgcacaatcgagtagatgat
attgaaaaaacacgcctttatgttgaaagtttagttccagatgctcgggtggccatcatc
catggtcgaatgactgaagtgcagttggaaggaattctttttgactttattcatggcgat
tatgatgtactggtgacaacgacaatcattgaaacaggggttgatattccaaatgctaat
acgttagtagttgaatctgcggatcggatgggattggcgcaactgtatcaaattcggggg
cgggtaggccgttcaaataatttggcgtatgcttattttatgtatccagctaatcgaaca
ttaactgaggtaagtgagcatcgccttgaagcgattcgtgattttactgaattaggttcg
ggctttaagatcgcaatgcgtgacctatccatccgaggggcaggcgatttgctcggctct
caacaacatggatttatcaataccgttggatacgatctatacacccaaatgttgcaggaa
gcggtggctgctaaacaaggtaaggaaaaggcgaaagtgcaaacggatgccgaaattaat
ttagatgttgaggcatatttgcctgaaaaatatgttccaggcggagcatctaaaattgaa
ctttaccagagaattagccgagctaaagtagcaaatgacttagtggagatcgaagaagat
ttgttggatcgttatggggaactacctatggcggcacactatcttctagcgatcgctgaa
ttaaagcgattagctgatctggtgggagtatctaaaattattcgagataaggttagaact
gaaattatccatgtgttctttacaccgcaggctaatttaaggcaagttgattggttggtg
gcactcaagcaaggtcgattaagaggccaagcaattgcgatgcaacctgctcaaattgat
gttgtgattcaaccgaaaatgacccaagacaattggttagatggactaaaaatctttttg
gaggcctttaatgcaacccaagaaaaaggagcaaagtaa
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