Weissella ceti WS74: WS74_0239
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Entry
WS74_0239 CDS
T03280
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wct
Weissella ceti WS74
Pathway
wct03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WS74_0239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wct03400
]
WS74_0239
Enzymes [BR:
wct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WS74_0239
DNA repair and recombination proteins [BR:
wct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WS74_0239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AIM62491
UniProt:
A0A075TZ29
LinkDB
All DBs
Position
279989..283498
Genome browser
AA seq
1169 aa
AA seq
DB search
MQLLELIAQNEDLQTLENVLPEGGRHVISGLTGTARTTYLAALHTKTDGPTVLIADNDYH
ADQIFEDLVGLLGENSVYLFPTEDTLATEVALTSPDALIARVSALHALRQNEHAIVITSV
SGAQRYLPPVDSFDAAAITIDFSHEFELGDLQKQFHAMGYQKTAAVEQPGEFAVRGSIVD
IFPMDAAYPVRMDFFDTELDSLRTFDVATQRSLDRLDDVQILPATDLIADEHRRTTFTTS
LELMLTDQRDALEGAAKRHLTEGVQPLLDMLADYQMPGMVRAYLDVLYPERVSILDYVPE
NGVVIFDDYPRALENAAQFEVENNEWVSEQMASGLMLQPNDTGFKLAELARDVKQASILT
TTLQRGIGNLRQTTLTNVTVRPAQQFFGQMPLLKNDVSRWQKQGYTILFLANTAERVEKT
ENTLNDFGVPTNAVRPDGLVTERTQVTELALSAGFEWPAQKLMIVTERELFQQVKKKAPR
RQTVSNAERIKSYNELNVGDYVVHTNHGIGIYEGMETIERNGVKQDYITIGFQKDAKIFI
PVTQLDLVQKYVGAAEKAPKINKLGGAEWQKTKAKVAKKVEDIADDLLALYAERELRQGY
AFSPDGDAQQRFEAAFPYAETPDQSRSTEEIKRDMEKKRPMDRLLIGDVGFGKTEVAMRA
SFKAVNDHKQVAILVPTTILAQQHYESFVSRFEGTDAKIGVLSRFQSTKQRRETLEALAL
GELDVVIGTHRLLSKDVTFDNLGLLIVDEEQRFGVKHKERLKELEANVDVLTLTATPIPR
TLNMSMVGVRDLSVIETPPANRYPIQTYVIEQNGQTIASGIERELARGGQVFYLHNRVDD
IEKTVDYIQTLAPDARVTYVHGQMTETQLEGVLVDFINGEYDVLVTTTIIETGVDIPNAN
TLFVENADHMGLSQLYQLRGRVGRSNNLAYAYFMYPGTRSLSEESEKRLEAIRDFTELGS
GFKIAMRDLSIRGAGDLLGQSQHGFINTVGYDLYMQMLNEAVEAKRGKKQVQKSDAELDL
QCQAYLPQEYVSDGPQKIEIYQRIRKATQAAEFAEITDDLFDRFGELPETVEALIAVGQL
KANADYAMITQIKRPRQHMQQIVVTFDEKVIDMNMVQMALKSAHMPGQVKQISQLELIIP
IQPKQTELEWLKMLNSFAEALREARTKEK
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgcaattgctcgaattgatcgcacaaaatgaagatttacaaacgttagaaaacgtgttg
cctgaaggtgggcgacacgttatttctggcttaacaggaactgctcgaacaacatatttg
gccgcgcttcacacgaagacagacggaccaacagtgttgattgcagataatgattatcat
gccgaccaaatctttgaagatttggtggggcttttaggtgagaactctgtctatctattc
ccaaccgaagatactttagcgactgaagtggctttgacatcaccagatgcgttgattgcg
cgcgtgagtgcattgcatgcactacgacagaatgaacacgctattgtgatcacatcagtt
agcggtgctcaacgttatctaccgccagtggatagctttgatgctgccgcaatcactatt
gatttcagtcatgaatttgaattaggggatttacaaaagcaatttcatgccatgggatac
caaaaaacagcagcggtcgaacaacctggtgaatttgctgttcgtggatcaattgtcgat
atctttcctatggatgccgcgtatcctgtccgaatggacttctttgatacggaattagat
tcattacgtacgtttgatgttgcgacacaacgtagtcttgatcgtttagatgacgtgcag
attttacctgcgacggatttaatcgcggatgaacatcgtcgtacaacatttacgactagc
ttggaattgatgttaacggaccaacgtgatgcattagaaggggccgctaaacgtcatctg
actgaaggtgtacagccactattagacatgttggcagattaccaaatgccaggaatggtc
cgtgcgtatttagatgtcttatacccagagcgtgtaagtatcttggactatgtaccagaa
aacggggttgttatctttgatgattacccacgtgccttagaaaatgcggcccaatttgaa
gttgaaaacaacgaatgggtgtcagagcagatggcatctggattgatgttgcaacctaac
gatactggttttaaattggccgaattagcgcgtgatgtgaaacaggctagtattttaaca
acgacactgcaacgtggaattggtaatttacgccaaacaacgcttactaatgtgacagtt
cgtccagctcaacaattctttggacaaatgccactgttaaaaaatgatgttagtcgttgg
caaaagcaaggttataccattttgttcttggcaaacacagcagaacgcgtagaaaaaaca
gagaataccttaaatgattttggtgtcccaacaaacgcagtgcgtccagatggtttagta
acggaacgcacacaagtaacagaacttgcattgagtgcgggatttgaatggccagcgcaa
aaattgatgattgttacggaacgcgaattattccaacaagtgaagaagaaagcgccacgt
cgccaaacagtctcaaatgcggaacgcattaagagttataacgaattgaatgttggcgac
tatgttgttcatacgaaccatggaattggaatctatgaggggatggagacaattgaacgt
aatggtgttaagcaagactacattacgattggtttccaaaaagatgcgaaaatctttatt
ccagttacgcaattagatcttgtacaaaagtatgttggagcggctgaaaaagcgcctaag
attaataaattgggtggtgccgaatggcaaaagacaaaggctaaggttgcgaagaaggtt
gaagatattgcggatgaccttctagcgttatacgctgaacgtgaattgcgtcaagggtat
gcgtttagtcccgacggggatgcccaacaacgctttgaagcggcctttccttatgcagaa
acacctgaccaaagtcgttcaactgaagaaattaaacgtgacatggaaaagaagcgtccg
atggatcgtttgttgattggggatgtcggttttggaaaaaccgaagttgcgatgcgggct
agctttaaggcggttaatgatcataagcaagtggccattttagtgccaacgactattctg
gctcagcaacattacgaatcatttgtgagccgttttgaaggcactgatgcgaaaattggg
gtgttatcacgattccaaagcacgaagcaacgacgtgaaacccttgaagcgttagccttg
ggagaattagatgttgtgattggaacacatcgtctgctttcaaaagacgtgacatttgat
aatctagggttgttgattgtcgatgaagagcaacgttttggtgtgaagcataaagagcgt
ctaaaagagctagaagcaaatgttgacgtcttaacgttgacggcaacacctattccacga
acattgaatatgtcgatggttggggtacgtgacttgtcagtgattgaaacaccaccagcc
aatcgttaccccattcaaacatatgtcattgaacaaaatggtcagacaattgcgagtgga
attgaacgtgaattagcacgtggcgggcaagtcttttacctccacaatcgcgtggatgac
atcgaaaaaacagtcgattatattcaaacattagccccagatgcacgtgtaacttatgtg
catggtcaaatgactgaaacccaattagaaggtgtcttagtcgatttcatcaatggtgag
tacgatgtattggtcacgaccacgattattgaaacgggtgttgatattccaaatgcgaat
acattgtttgttgaaaatgcagaccatatgggattgtcacaactgtatcaattacgtgga
cgtgttggtcgatcaaacaatttagcttatgcctactttatgtatccagggacacgttct
ttgagtgaggagagtgaaaagcgtttagaagccattcgtgattttacagaactgggttct
ggtttcaagatcgccatgcgtgatctttcgattcgtggggccggtgatctcctaggacag
agccaacacggatttattaataccgtgggatatgacctatacatgcagatgttgaacgaa
gcagttgaggctaaacgtggtaagaagcaagtgcaaaagtctgacgcggaacttgatttg
caatgccaagcttacttgccacaagagtacgttagtgatggtccgcaaaagattgaaatt
taccaacgtattcgtaaggcaacacaagcggctgaatttgcggaaatcacagatgatttg
tttgatcgctttggtgaattgcctgaaacggtagaagcattaatcgccgtaggtcaatta
aaagcaaatgctgattatgcgatgattacgcaaatcaagcgtccacgccaacacatgcaa
caaattgtggtgacctttgatgaaaaggttatcgacatgaatatggtgcaaatggcgttg
aaatcagcacatatgccaggacaagtgaagcaaattagtcaattggaattgattattcca
attcagcctaagcaaacagaattagaatggttgaagatgttaaatagctttgcggaagcg
ttacgtgaagcgcgaacaaaggaaaagtaa
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