Weissella ceti WS74: WS74_0476
Help
Entry
WS74_0476 CDS
T03280
Name
(GenBank) Ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
wct
Weissella ceti WS74
Pathway
wct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WS74_0476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wct03019
]
WS74_0476
Messenger RNA biogenesis [BR:
wct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WS74_0476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
RVE6
Motif
Other DBs
NCBI-ProteinID:
AIM62728
UniProt:
A0A075TZ05
LinkDB
All DBs
Position
complement(548402..550093)
Genome browser
AA seq
563 aa
AA seq
DB search
MNKSELAIRPDEVAVYALGGLGEVGKNTYGVQYGDEIIIIDAGVKFPEDELLGIDYVIPD
YTFLKENRDKIKALVITHGHEDHIGAIHFFLDAVNVPVYAGPLAMALIRNKLDERNMLRD
VTLNEIDEDTILEFEHMSVEFFRTTHSIPDTFGVAVKTPVGTIVETGDFKFDLTPTTNQL
PNLQKMARIGSEGVLLMMSDSTNAEKDEFSKSERWVGKTINKLFDEIEGRIIFATFASNM
SRVQMAVESALSHGRKIAVFGRSMESAVKNGMELGYLDIPNEMLIDAHEINKLPPNEVLI
LSTGSQGEPMAALARIANGTHKQIKIQPDDTVIFSSSPIPGNTSSVNRVINELEEAGATV
IHGKINNIHASGHGGQEEQKLMLSLIKPKYFMPVHGEYRMLKVHEGLAHDVGVDPDNTFV
LDNGDVLALTADSARVADHFPAEDTYVDGNGIGDIGAAVLRDRKMLSQDGLVVVVATIDL
KNQEITAGPDILSRGFIYMRESEELINEGRKEIFHALLGAMREPNASEHSLRNAVVSHLQ
RFMFEKTHRRPLILPMFIMINRD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatcagaacttgccattcgtcctgacgaagtggccgtctatgccctgggaggc
ttaggcgaagttgggaaaaacacttacggtgttcaatatggtgatgaaatcattattatt
gatgccggagttaagtttcctgaagacgagttattgggaattgactatgttattcctgat
tacacttttctaaaggaaaatcgtgacaagattaaggcgttagttattacgcacggtcac
gaagaccacatcggtgctatccacttcttcttggatgctgttaacgttcctgtctacgcc
ggaccattagccatggctttgattcgtaacaagttggacgaacgtaacatgttgcgtgat
gtgacgttgaacgaaatcgatgaagacactattcttgaatttgaacatatgtctgttgag
ttcttccgtacaacacactctattccagacacatttggtgttgccgttaaaacacctgtt
ggaacaatcgttgagactggtgactttaagtttgacttgacccctacgacgaaccaattg
cctaatctacaaaagatggcgcgtatcggttctgaaggtgtcttgttgatgatgtcagat
tcaacaaacgctgaaaaagacgaattttcaaagtctgaacgatgggttgggaaaaccatc
aacaagctatttgatgaaattgaaggtcgtattatctttgctactttcgcatcaaacatg
tctcgtgttcaaatggctgttgaatcagccctatcacacggtcgtaagattgctgtgttc
ggtcgttcaatggaaagtgccgttaagaacggtatggaattaggatatcttgatatccct
aatgaaatgctgattgatgcacacgaaattaacaagttaccaccaaatgaagtcttgatt
ttgtctactggatctcaaggtgaaccaatggctgcgctagcacgtatcgctaacggaaca
cacaagcaaatcaagattcaacctgatgatactgttatcttctctagctctcctattcct
ggaaacactagttcagtgaaccgtgttatcaacgaattagaagaagctggtgcaacagtt
atccacggaaaaatcaataacattcacgcttctggtcacggtggacaagaagaacaaaag
ttaatgttgtcattgattaagccaaagtacttcatgcctgtccacggtgaataccgtatg
ttgaaggtccatgaaggtttggctcatgatgtaggtgttgatccagataacacattcgta
ttggacaatggagatgtcttagcgctaacagcagactctgctcgtgtagctgatcacttc
cctgctgaagatacgtatgtcgacggtaatggaattggtgacattggtgcagctgtcttg
cgtgatcgtaagatgttgtcacaagatggtcttgtcgttgttgttgcaacaatcgaccta
aagaaccaagaaatcactgctggtcctgatatcttgtctcgtggatttatctacatgcgt
gaatcagaagaactaatcaatgaaggtcgcaaggaaatcttccatgctttgctcggcgca
atgcgcgaaccaaacgcaagcgaacatagcctacgtaatgccgttgtttcacacttacaa
cgctttatgtttgaaaagacacaccgtcgtcctttgatcttgccaatgttcatcatgatt
aatcgcgattaa
DBGET
integrated database retrieval system
