Weissella diestrammenae: H9L19_04495
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Entry
H9L19_04495 CDS
T06876
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
wdi
Weissella diestrammenae
Pathway
wdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L19_04495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wdi03019
]
H9L19_04495
03400 DNA repair and recombination proteins [BR:
wdi03400
]
H9L19_04495
Enzymes [BR:
wdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9L19_04495
Messenger RNA biogenesis [BR:
wdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L19_04495
DNA repair and recombination proteins [BR:
wdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H9L19_04495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QNN76085
UniProt:
A0A7G9T7L0
LinkDB
All DBs
Position
909981..913169
Genome browser
AA seq
1062 aa
AA seq
DB search
MDNYLISPIDNKLDLINLDDVKKSIPSQFMESVARNLPFYIIRPEEMSILVEVMDIDTFY
RDDIIILRNNLFDKTFTYKNTLSDISKAFEMLYLSEDSELQGNERVRIERINTFYGKVNF
SKKSGNYFVTYSEDLWGKYKNYDYYEIRESSNPELVDEVVADITIPLDEEEILFLDFVSE
NNLNNSVNFIIDSFEQMPHRYTERIQVLKKLHPNLNITFSTPSIKRQSIDKLEDYRKILE
NVWGYSKFRELDMYSHIEKRDKNLLKISQAQIIDDIVQQVENARDGQSYRDIYITASTGA
GKSVMFQVPTLYLTEKYKDDKPLILVISPLIGLMNDQVDSMKRKGVDNAETINGNTPPYE
KQSILQRINDGKVDMLYLSPETLQARGDIKMLIGSRKIGMVIVDEAHIVTTWGKSFRADY
WYLGIYLQKLRKEYQFPIITFTATAIYGGREDMYMDTRNSLNMIRPIAYFGLVRRNDIEM
KIRSSNKFEEGREKDYRKTKNLLAFKHLEDAYRQKQKSLIYFPTIKLLNNFYSFLEENAK
YIVDVSGKYYGSLTKEEKDTVLEGYKNGDIQFVMATKAFGMGIDIPDITNVYHFNPTGNV
VDYVQEIGRVARNHKLVGKGYGILDYLPQDFNAVQQLQGMSKIKKNQIQGVMQKILDIYR
NKGYNRNLVVSADDFKYIFSENIDDDSGSLDNKVKTILLMIEKDFSSSKKLGYSPFVARP
RSIFGNELIIVSKDVESKLNNSSLKHYFEFLTSISGGDYSSVISVNLSGIWEKHYKTMSF
PEFKYRLNTPEERDKMQHAKIFGLFNFASGVQYSFDNENGTRLSKYKEILESYQIFLDEM
QRQNKQFEVKDLGKFIKNSLHISDGFEARSMAQVLINATFEFQKLKDIKVLREREATEKT
LFSVVRSADTFAEFVSLVAGKLYNPKYNFVKDENAMNIFHYRNSQNLDEETIVLGIGEAF
GLGNFTTLGGYNPQIYIRINSVYPVEQAIKQDQNYRNLILEDVVFKHRIGVAMQKYLFTH
KENGMNAQEKITNYTKWFWDKIEDYFMGRLPSEVEESLFSKK
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggataattatttgattagtccaattgacaataaattagatctaataaatcttgacgat
gtaaagaaaagcataccttctcaatttatggaaagtgtggcgcgtaatttaccattctat
attatacgtcctgaggaaatgagtatattagttgaagtgatggatatagatacattctat
cgggatgatatcatcatattacgaaataacttatttgacaaaacgtttacatataaaaat
acgctgagtgatatttcaaaagcttttgaaatgctctatcttagtgaggactctgaatta
caaggaaatgagagggtacggattgaaagaataaacactttctacgggaaagttaatttt
tcaaaaaaaagtggtaattattttgtgacttatagtgaagacctatggggtaaatacaaa
aattatgactattatgagattcgagagtcaagtaatccagaattagtagatgaagtagta
gcggatatcactatacccttggatgaagaagagattttatttctagattttgtgagtgaa
aataatctgaataattcagtgaattttattattgatagttttgaacagatgccacataga
tatacagaaagaattcaagtattaaaaaaactgcatccaaacttaaatattactttttct
acaccgtcaataaaaaggcagagtattgacaaactcgaggactatcgtaaaatcttggag
aatgtttggggatattctaaatttagggagttagatatgtattcccatattgaaaaaaga
gataagaatttattaaaaatttctcaggcacaaatcatagatgacatagttcaacaagtt
gaaaacgctagagatgggcaatcgtatagagatatatatataactgcatcgactggtgct
ggaaagtctgtgatgtttcaggtgccaacgttatatctaactgaaaaatacaaagacgat
aaaccgttaatcttagttatttctccattaattggattaatgaatgatcaagtcgatagc
atgaaacgaaaaggtgtcgataacgctgaaacaattaatggtaatacgccgccatatgaa
aaacaatctatattacagcgaatcaatgatggaaaagttgatatgttgtacctatcacca
gagacattacaagctagaggcgatataaaaatgttgattggtagtaggaaaattggaatg
gttattgtcgatgaagctcatattgtaaccacttggggtaaatcctttagagcggactac
tggtatctaggaatatatctgcagaagttacgaaaagaatatcaatttccgataataacg
ttcacggccactgctatttatggtgggcgtgaggatatgtatatggataccagaaatagt
ctaaacatgattagaccaatagcttatttcggtctagttcgaagaaacgacatcgagatg
aagattcgttcctctaataaatttgaagaaggaagggaaaaagattatcgtaaaacgaag
aatttgttagcttttaagcatcttgaagatgcatataggcagaaacagaagtctttaata
tattttcctactattaaattgttgaataatttttattcatttttagaagaaaatgctaaa
tatatagttgatgtcagtggaaaatattatggatctttgacaaaagaagagaaagatact
gttttagaagggtataaaaatggtgacattcaatttgtgatggcaacaaaagcgtttggg
atgggaattgacattcctgacataacaaatgtatatcatttcaatccaacaggaaatgtt
gttgattatgttcaagaaattgggcgagttgcacggaatcacaagttagttggtaagggc
tatggaattcttgattatttgcctcaagattttaatgctgtgcaacaattgcaaggtatg
agtaaaatcaaaaaaaatcaaattcaaggcgttatgcaaaagatattagatatatataga
aataagggatataaccgtaacttagtggtaagtgccgacgattttaaatatatattttct
gaaaatattgatgatgatagcggtagtttagataataaagtaaaaactattctattaatg
attgaaaaagatttctcatctagtaaaaaattaggatactcaccatttgttgcacgtcca
cgaagtatttttgggaatgaattaataatagtttcaaaagatgtggagagtaaattgaat
aactcatctttaaagcattatttcgaatttttgacctcgatttctggtggagattattca
tcagttatttcggtaaatctttcaggaatatgggaaaagcattataaaacaatgtcattt
ccagaatttaaataccggctgaatactcccgaagaacgcgataagatgcaacatgcaaaa
attttcggattatttaattttgctagcggcgtccaatactcttttgataatgaaaatgga
actaggttatcgaaatataaggaaatacttgagtcctatcaaatttttcttgatgaaatg
caacgtcagaataagcaatttgaagtgaaagacttaggtaagtttataaagaattcatta
cacattagtgatggatttgaagcacgtagtatggcacaagttttgataaacgccacattt
gagtttcaaaagttaaaggatatcaaagtccttcgtgaacgtgaagcaacggagaagaca
ttattttctgttgttaggtctgcggatacctttgcagaattcgtttcgttagtagcaggt
aaattgtataatcctaaatataattttgttaaagatgaaaatgccatgaatatctttcat
tatcggaattcgcagaatttggatgaagaaacaatagttttgggcattggcgaagccttt
ggactaggtaatttcacgaccttgggaggatataaccctcaaatatatattcgtatcaac
tcagtttatccggtagaacaagcaattaaacaagatcagaattatcggaatttgatattg
gaagatgttgtttttaagcaccgaataggtgtcgcaatgcaaaaataccttttcacgcat
aaagaaaatggaatgaatgcacaagaaaaaattacaaattatacaaaatggttttgggac
aaaatagaggattattttatgggacgattaccctctgaagtcgaagaaagtcttttttcc
aaaaaataa
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