Periweissella cryptocerci: EQG49_05980
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Entry
EQG49_05980 CDS
T06454
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
wei
Periweissella cryptocerci
Pathway
wei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
wei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EQG49_05980 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wei03021
]
EQG49_05980 (rpoC)
03400 DNA repair and recombination proteins [BR:
wei03400
]
EQG49_05980 (rpoC)
Enzymes [BR:
wei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EQG49_05980 (rpoC)
Transcription machinery [BR:
wei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EQG49_05980 (rpoC)
DNA repair and recombination proteins [BR:
wei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EQG49_05980 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QBO36044
UniProt:
A0A4P6YTH0
LinkDB
All DBs
Position
complement(1298446..1302102)
Genome browser
AA seq
1218 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRSLEEIIYFASYVVTEAGDTPLEKKQLLSEREYRELKLEYGNEFQAAMGAEAVKTLLD
DVDLAKEAESLKHDLKEASGQKRTRAVRRLDIIEAFFQSGNKPSWMVMDVIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPRQ
MALELFKPFIMKELVSRELASNIKNAKRKIDRRDDDVMDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKAMRLHPLVTEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAGHIL
APKDGKPIVAPSQDMVIGNYYLTTEEAGREGEGMIFKDLNEAQIAYQNKYVHWHTRIGVQ
TSSFPAAKPFTPEQRDKILVTTVGKLIFNNILPGDFHYLNEPTEAALTLGVDDKYFIEPG
TDLKEFLKDQPVVPPFKKGFLSDVIAEVYKQYKVTETSLLLDRMKDLGYEESTISGLTVG
AADVTELPEKADIVEDAHKQVAVVTKQFRRGLITDDERYERVISIWNGAKDQIQQKLIES
FETTNPIFMMSDSGARGNISNFTQLAGMRGLMASPSGRIMELPIIANFREGLSVLEMFIS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREVDCGTDRGLDVYAFMEGNEVIESL
YDRILGRYAMKTIKNPETGEVIIRSNQMIDEDKAKAIVEAGIEKVTIRSAFTCNTKHGVC
EHCYGRNMATGDEVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVSGGNDITQGLPRVQE
IFESRNPKGRAEITEVTGTVESIEENPAERTKEITIQGETDTRTYTLPLAARVRVAEGDH
IHRGDALNDGSIDPKQLIQVRDVLSTEIYILREIQKVYRMQGVEVADKHVEVMARQMLRK
VRVMDPGDTDMLPGNLIDINDFRDAVAQTVITGGIPATARPVLLGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMQQYRDIQSKTVGTPVATAEG
VYSIADIEEQMKAEQETK
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgttaataagtttgaaagcatgcaaatcggtctggcatcgccagataagatt
cgtagctggtcttacggggaagttaaaaagcccgaaaccattaactaccggactttgaag
cctgaaaaagacggactcttcgacgaacggatttttggacctactaaagactgggaatgc
gcctgtggtaagtacaagcgtattcgttacaagggtatcgtttgtgatcgctgtggtgtt
gaagttacacgtgccaaggttcgtcgcgaacgtatgggtcacatcgaacttgcagcccca
gtaactcacatctggtacttcaagggtattccttcacggatgggtcttgtgcttgacatg
agcccccgttcattggaagaaattatctactttgcttcatacgttgttactgaagctggt
gatactccacttgaaaagaaacaattgctttcagaacgcgaatatcgcgaattgaagctt
gaatatggtaacgaattccaagcagccatgggtgccgaagccgttaagactttgttggat
gacgttgaccttgctaaagaagctgaatcacttaagcatgatttgaaggaagcctcagga
caaaagcgtacccgtgcggttcgtcgtttggacattattgaagccttcttccaatcaggt
aacaagccatcatggatggttatggatgtgattccagttattccacctgacttgcgtcca
atggttcaacttgaaggtggccgtttcgctacttctgacttgaatgacttgtaccgtcgg
gttatcaaccgtaacaaccgtttgaagcgtttgcttgatttgaatgcccctggtatcatc
gtgcaaaacgaaaagcggatgttgcaagaagctgttgatgcattgattgataacggtcgt
cgtggtcgtccagttgctggtcctggtaaccgtccattgaagtcactttcacacatgttg
aagggtaagcaaggacgtttccgtcaaaacttgcttggtaagcgtgttgactactctggt
cgttcagttatcgacgttggaccattcttgaagatgaaccaaatgggtcttccacgtcaa
atggcgttggaactcttcaagcctttcatcatgaaggaattggtttcacgtgaacttgca
tcaaacatcaagaatgctaagcgtaagattgaccgtcgtgacgatgatgtcatggacgta
cttgaagacgtaatcaaggaacacccagttcttttgaaccgggcacctactttgcaccgt
cttggtattcaagccttcgaacctgtgttagtttctggtaaagcaatgcgtttacaccca
ttggttactgaagcatataacgccgatttcgatggtgaccaaatggccattcacgtgcca
ttgtctgatgaagcgcaagctgaagctcgtttgttaatgttagctgctggacacatcttg
gcacctaaggatggtaagccaatcgtggccccatctcaagatatggttatcggtaactac
tacttaacaactgaagaagctggccgtgaaggtgaaggaatgatctttaaggatctgaac
gaagcccaaattgcctaccaaaacaagtatgtgcactggcacacacggattggtgtccaa
acttcatcattcccagctgcaaagccgtttacacctgaacaacgcgataaaatcttggta
actacagttggtaagttgattttcaacaacatcttgcccggtgatttccactacttgaat
gaacctactgaagctgccttgacacttggtgttgatgataagtacttcatcgaacctggt
actgatttgaaggaattcttgaaggatcaacctgttgttccaccattcaagaagggcttc
ttgtcagatgttattgccgaagtttacaagcaatacaaagttactgaaacttcactctta
ttggaccgtatgaaagaccttggttatgaagaatcaacgatttctggtttgactgtgggt
gcggccgacgttactgaattgcctgaaaaagctgatatcgttgaagatgcccacaaacaa
gttgctgttgttactaagcaattccgtcgtggtttgatcaccgatgatgaacgttatgaa
cgtgttattagtatttggaacggagctaaggatcaaatccaacaaaagcttattgaaagt
tttgaaactactaacccaatcttcatgatgtctgactcaggtgctcgtggtaacatctct
aactttacacaacttgctggtatgcgtggtttgatggcttctccaagtggtcgaatcatg
gaattgccaatcatcgcgaacttccgtgaaggtttgtcagtgttggaaatgtttatttct
acccacggggctcgtaaaggtatgactgatacggccttgaagactgccgattctggttac
ttgactcgtcgtttggttgacgtggcccaagatgttattattcgtgaagttgattgtgga
actgaccgcggacttgacgtatatgcatttatggaaggtaatgaagtcatcgaatcattg
tacgaccgtatccttggccgttacgcaatgaagactatcaagaacccagaaactggcgaa
gttatcatccgttctaaccaaatgatcgacgaagacaaggctaaggccattgttgaagct
ggtatcgaaaaggttactatccgttcagcattcacttgtaacactaagcacggtgtttgt
gaacactgttatggacgtaacatggctactggtgacgaagttgaagttggtgaagcagtt
ggtactgttgccgctcaatcaatcggtgaacctggtactcaattgactatgcgtaacttc
cacactggtggtgtgtctggtggtaacgatattacccaagggcttcctcgtgttcaagaa
atctttgaatcacgtaaccctaaggggcgtgccgaaatcactgaagttactggtacagtt
gaatcaatcgaagaaaacccagcagaacgtactaaggaaatcactattcaaggtgaaact
gatacgcgtacttacacattgccattggcagctcgtgtacgtgttgcggaaggtgatcac
attcaccgtggtgacgctttgaatgatggttcaattgatccaaagcaattgatccaagtt
cgtgatgttctttctactgaaatctacatcttgcgtgaaatccaaaaggtttaccggatg
caaggggttgaagttgctgataagcacgtggaagttatggcgcgtcaaatgctccgtaag
gttcgcgtgatggatccaggtgatactgacatgttgccaggtaacttgatcgatattaac
gacttccgtgatgctgttgcacaaacagttatcactggaggtattccagcaactgcacgt
ccagtgcttcttgggattactaaggcttcacttgaaactaatagtttcttgtctgccgca
tcattccaagaaactacgcgtgtgcttactgatgccgctattcgtggtaagaatgatcca
ttggttggtcttaaggaaaatgttattatcggtaagattattcctgccggtactggtatg
caacaataccgtgacattcaatctaagactgttggtactccagttgctactgctgaaggt
gtctactcaattgcagacattgaagaacaaatgaaggcagaacaagaaaccaagtaa
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