Periweissella cryptocerci: EQG49_13140
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Entry
EQG49_13140 CDS
T06454
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
wei
Periweissella cryptocerci
Pathway
wei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EQG49_13140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wei03019
]
EQG49_13140
Messenger RNA biogenesis [BR:
wei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EQG49_13140
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
QBO37341
UniProt:
A0A4P6YWZ9
LinkDB
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Position
complement(2922628..2924304)
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AA seq
558 aa
AA seq
DB search
MDKIDIRPDETAVFAVGGLGEIGKNTYGIQFGDEIIVIDAGIKFPEDELLGIDYVIPDYS
YLKENADKIKALVITHGHEDHIGAIHYFLNAVNVPVYAGPLALALIKGKLEEHGLLNTTE
LHEINEDSVLQFDNIKVEFFRTTHSIPDTFGIALTTPSGVIIETGDFKFDLTPTTHQPPN
LQKMAKFGSEGVLALMSDSTNAERPEFTKSEQFVAESIKKIFKNVEGRIIFATFASNLSR
VKVAAEVAIAEGRKIAVFGRSMETAINNGRELGYLDIPDSSLVDAYEINHLPAEEVMILC
TGSQGEPMAALARIANGTHRQVSIQPNDTVIFSSSPIPGNTQSVNRVINELEEAGANVIH
GKINNVHTSGHGGQEEQKLMLSLIKPKYFMPVHGEYRMLKVHTGLAQQIGVPLDHSFILE
NGDVLALTADSARVAGHFPASDVYVDGNGVGDIGNVVLRDRQMLSQDGLVVVVATINLTK
QEITAGPDLLSRGFVYMRESGEMINEGRRRIFRTIRYAMQEENATENSIRSAVIDDLQTF
LYEKTERHPMILPMFVMI
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatcgatattcgcccagatgaaactgcagtctttgcagttggtggtcttggt
gaaatcgggaagaatacttacggaattcaattcggtgacgaaattatcgtcattgatgct
gggattaagtttccagaagatgaattactaggtattgattacgttattcctgattactcg
tatctcaaggaaaatgctgacaagatcaaagcgttagttattacccacggacacgaagac
cacatcggggcaatccattatttcttaaacgccgtcaatgtaccagtttatgctggccct
ctcgcccttgctttaattaaaggcaagctagaggaacatggtttgttgaatacgactgaa
cttcacgaaatcaatgaagactcagtccttcaattcgacaacattaaagttgagttcttc
cggacgacccactcaattcctgatacatttgggattgctttgacaacgccttctggtgtc
atcatcgaaactggagatttcaagttcgacctcacaccaactacacaccagccacctaac
ctacaaaagatggctaagttcggttctgaaggtgtcctcgctttaatgtctgattcaacc
aacgctgaacgtcctgaattcacgaaatcagaacaattcgttgctgaatcaatcaaaaag
attttcaagaatgttgaaggtcggattattttcgccaccttcgcttctaacctttcacgg
gttaaagttgctgctgaagtagcgattgctgaaggtcgtaaaatcgctgtcttcggtcgt
tcaatggaaacagcaattaacaacggccgtgaacttggttacctagacattccagactca
tcattggtagatgcttacgaaattaatcacttacctgctgaagaagttatgattctttgt
accgggtcacaaggtgaacccatggccgcacttgcacggattgctaacggtacccaccgt
caagtttcaatccaaccaaatgacaccgtaatctttagttcttctccaattcctggtaac
actcaatctgttaaccgtgtaattaatgaacttgaagaagctggcgccaatgtgattcac
ggtaagattaacaacgtccacacttctggtcacggtggccaagaagaacaaaagttgatg
ttatcattaatcaaacctaagtatttcatgcctgtccacggtgaataccggatgctcaag
gttcacactggtttagcacaacaaatcggtgtccctcttgatcacagtttcattttggaa
aatggggatgtcttagcacttacagccgactcagcgcgtgtcgctggtcacttccctgct
agcgatgtttacgttgatggtaatggtgttggtgatatcggtaacgtcgtcttacgcgac
cgtcaaatgctttctcaagatggtttagttgtcgtagtggcaacaatcaacttaactaag
caagaaatcaccgccggtcctgacttattatctcgtggatttgtgtacatgcgcgaatct
ggtgaaatgattaatgaaggtcgtcgtcgcatcttccggacaatccggtatgcaatgcaa
gaagaaaatgcaaccgaaaattcaattcggtctgctgtcattgatgacttacaaactttc
ctttatgaaaagactgaacgtcacccaatgattttaccaatgtttgtaatgatctaa
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