Wolbachia endosymbiont of Delia radicum: L2227_06165
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Entry
L2227_06165 CDS
T08243
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
wej
Wolbachia endosymbiont of Delia radicum
Pathway
wej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2227_06165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wej03019
]
L2227_06165
03009 Ribosome biogenesis [BR:
wej03009
]
L2227_06165
Enzymes [BR:
wej01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L2227_06165
Messenger RNA biogenesis [BR:
wej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L2227_06165
Ribosome biogenesis [BR:
wej03009
]
Prokaryotic type
rRNA processing factors
L2227_06165
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
TdIF1_2nd
Motif
Other DBs
NCBI-ProteinID:
UJQ20737
LinkDB
All DBs
Position
complement(1249508..1251271)
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AA seq
587 aa
AA seq
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MINSGKRVLLIENSICSNEVRVALSINNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQ
AVFIEYGKNKQGFLSFSEISLDYFNIPEKEKETIFEGYSNDDCIEEASANVSSDSAASKN
VNESGSGFVREVPLYKKYKLQDVISVNQKILVQLTKEERGNKGASFTTYITLVGRYCVFM
PNSMSKGGVSRRIEDANVRKQLKDILNLINLPKRSGLIVRTVGSGKSKKEIEQDYNYLSS
LWQSIQKNAFSVNAPSLIYNEADVIMRSVRDFCSDGIEVIVSGKESFEAVKQYANNALKG
SKLRYRLYRGYAPIFTYYGIEDQISELYSNRVELPSGGSLIITLTEAFVSIDVNSGKMTG
EDSIEETAYRTNMEAVPEISRQVNLRGLSGLIVVDFIDMLKYQYCRAVESAIKQAFKDDK
AKVQFSYINDFGLMVFSRQRIKPNIQEINTTECLHCKGTGRIKSNEVIVSSILRDLQHIA
NKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIEKEFNITLNVSIDNSLDVNTFVLKQGDDV
NLNGYKPLQNSGYQIGDSSNEEADNSNKLRGNFWLTKWLSRLLSSNN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
gtgataaatagtggtaaaagggtattattgatagaaaattctatctgttctaatgaggta
agagttgccttgtcaattaataacaaggttgtagaatttgaacaagaattcaaggaaaaa
aaacaattaagaggtaatatatacgttgcttatataaagcgtatagagccttctttgcaa
gccgtatttattgaatatggaaaaaataagcaaggttttttgtctttttccgagatatct
ctagattacttcaacattccagaaaaagaaaaggaaactatctttgagggctactcaaat
gacgattgtatagaagaagcctcagcaaatgtttcttcagattctgcagctagtaagaat
gtcaacgaatcaggtagtggttttgtaagagaggtacctttatataaaaaatacaaatta
caagatgttatttcagtaaatcaaaaaatattggttcagctaactaaagaggaacgaggc
aataaaggagcttcatttacaacatacataactttagtgggtagatactgtgttttcatg
ccaaattccatgagcaaaggtggagtgtcccgcagaattgaagatgctaatgtcagaaag
cagttaaaggatatactaaatttaataaacttgccaaaaagatcaggtttaatagtaaga
actgttggttcaggaaaaagtaagaaagaaattgagcaagattacaattacttatcctca
ttatggcagagcattcaaaaaaatgccttctctgtaaatgctccatcattaatttacaac
gaagcagatgtaattatgagatctgttcgtgatttttgtagcgatggtatagaagttata
gtgtctggaaaggaatcttttgaagcagttaagcaatatgctaacaatgcactaaaaggt
agtaagttgcgctatagattgtatagaggttatgctccgatctttacttactacggaatc
gaagatcaaatttctgagttatatagcaatagagtagaattgccatctggtgggtctttg
ataataactttaactgaggcgtttgtttcaatagacgtaaattcaggaaagatgacagga
gaagatagcatagaagaaacagcttatagaaccaacatggaagcagtacctgaaatatca
agacaggtgaatcttaggggcctatcaggattaatagtagtcgattttattgatatgttg
aaatatcagtattgcagagctgttgagtctgctataaagcaagcgtttaaagacgataaa
gctaaagttcaatttagctacataaatgactttggtttaatggtattttcaagacaaaga
attaaaccaaacatacaagaaattaatactacagaatgtttacactgcaaaggtactgga
agaataaaatcaaacgaagtaattgtttcatcaatactaagggacttacaacatattgct
aacaagaatcgaaataagtcttttgatttagtagcacacagtgcagttatagcgcacatt
tttaataacaaacgcaatacagtttctacaatcgaaaaagagtttaatattacattgaac
gttagtattgataacagtttagatgtaaatacatttgttttaaaacaaggagatgatgtt
aatttaaacggttataagccattacagaactctggataccaaattggggatagcagcaat
gaagaagctgataattcaaataaactacgaggcaatttttggctgactaagtggctttcg
cgccttttaagttctaataactaa
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