Wolbachia endosymbiont of Listronotus oregonensis: NMD99_00255
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Entry
NMD99_00255 CDS
T09674
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
welo
Wolbachia endosymbiont of Listronotus oregonensis
Brite
KEGG Orthology (KO) [BR:
welo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NMD99_00255 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
welo03021
]
NMD99_00255 (rpoD)
Transcription machinery [BR:
welo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NMD99_00255 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
Sigma70_r1_1
Sigma70_ner
Sigma70_r1_2
DDE_Tnp_ISL3
DUF1993
DNA_repr_REX1B
Sod_Ni
Motif
Other DBs
NCBI-ProteinID:
WMT84512
LinkDB
All DBs
Position
complement(47927..49870)
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AA seq
647 aa
AA seq
DB search
MSTINDAEDKKKVIRDLVTKSIKKGGFVTFDDINDKLSDENFSSDFIDDAISLLQDSGIN
VLESSEDEEDIPSNSDDSKLDDDDTSPNITATLVQNDDPVRIYLQDMSSVKLLSRADEIE
IAKKIESEKHNMLRAIIETSVTLKVIKVWRDDLSSGALLLREIIDLDAIYNSDFNVVPKE
ESEESAEDVEDSEDVSEDAEYCSDDEKDSKKSDDEKDGDNEDINSANLNVSILEMESDLL
PKVIVALDEIITLTNEALVLRKNSKDSSDELENLYSQIWSIALQIKLSDAAVARITQELY
KINRSITLEEANLIAEARKYDIDRESFYKVYDDVLLKHELKKIILLKINENQSSFTGELK
NKFLRFIDDNSEHIASTLNGIKQHIQEDNVQEFKELIRRIQKHEREVSEAKQEMIKANLR
LVVSIAKKYSKRGLDLLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRAIPE
QSKVVRIPVHMVEVISKINRALRKMTHEMGREPTLEELSVELTMPLERIRKVMKIARDPV
SLEAPTGKDDSSTFGDCIEDKRVSRPEDAAILADLRGITTNVLATLTPKEERILRMRFGL
GKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLKHPSRARKLRGFF
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactattaatgatgcagaagataagaaaaaagttatcagagatcttgtaactaaa
agtataaaaaaaggtggttttgtcacctttgatgatataaatgataaattatcagatgaa
aatttttcgtctgattttatagatgatgctatatctttattgcaggattccggaattaat
gtgcttgaaagtagcgaagatgaagaagatattccttccaacagtgatgatagtaaactt
gatgatgatgacacatcgccaaatattactgcaactttagtacaaaatgatgatccagtg
aggatttatttacaagacatgagctctgtaaagcttttgtcaagggcagatgaaatcgag
atagcaaaaaaaattgaatctgaaaagcataacatgttacgtgcaataattgaaacatca
gtaacattaaaggtgataaaagtatggcgtgatgatttaagtagtggagctctcttactg
agagaaattatagatctggatgcaatttataactctgactttaatgtggtacccaaagaa
gagagtgaagaaagtgctgaagatgttgaggattctgaggatgtttctgaagatgctgag
tactgtagtgatgatgagaaagatagtaaaaaaagtgatgatgagaaagacggtgataat
gaagatataaattcagcgaatttaaatgtttctattcttgaaatggaaagtgacttattg
ccaaaggtcatagttgcattggatgagataattactttaacaaatgaagcattggtatta
agaaaaaattctaaagattcctctgatgaactagagaatttatatagtcaaatatggtct
atagcattacaaattaagttaagtgatgctgctgttgccagaattacacaagaactttat
aagataaatagatccatcacgcttgaagaggctaatcttattgctgaggctagaaaatac
gatatcgatagagaaagtttctataaagtttatgatgacgtgcttttaaagcacgaattg
aaaaagataattcttttaaagatcaacgaaaatcagtcctcttttacaggtgaattaaaa
aacaaatttttaaggtttatagacgataactctgaacatatagctagtactttgaacggt
attaagcagcatatacaggaagataacgtgcaagaatttaaggagctaatcaggagaata
caaaaacacgaacgagaagtctctgaagcaaagcaagagatgattaaggctaacttaagg
ctagtagtttccattgctaagaagtattcaaaaagaggccttgatctgcttgatttgata
caagaaggcaatattggtcttatgaaggccgtggataagtttgattacaaacgtggatat
aaattttcaacttatggcacttggtgggtaagacaatcaatcactagggcaatacctgag
cagtctaaagtagttagaataccagttcatatggtagaagttatcagtaaaatcaacaga
gcattaagaaaaatgactcatgagatgggaagagagccgacgttagaggaattaagtgta
gaactgacaatgccactggaaagaatacgcaaagttatgaaaatagcaagggacccagta
agtcttgaagctccaacaggaaaggatgatagtagtaccttcggtgattgtatagaagat
aagcgagtctccagaccagaggatgctgcaatacttgctgacttgcgtggcattacaacc
aatgttcttgcaactttaacaccaaaggaagaaagaattctaagaatgcgttttggcctt
ggtaaagatgggaaggagcataccttagaagaagtaggaaaaatttttaatgtaacacgt
gagagaattaggcaaatagaggcaaaagcactgcgcaagttgaaacatccaagccgcgct
agaaaacttagagggttcttttaa
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