Wolbachia endosymbiont of Listronotus oregonensis: NMD99_04695
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Entry
NMD99_04695 CDS
T09674
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
welo
Wolbachia endosymbiont of Listronotus oregonensis
Pathway
welo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
welo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMD99_04695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
welo03019
]
NMD99_04695
03009 Ribosome biogenesis [BR:
welo03009
]
NMD99_04695
Enzymes [BR:
welo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NMD99_04695
Messenger RNA biogenesis [BR:
welo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NMD99_04695
Ribosome biogenesis [BR:
welo03009
]
Prokaryotic type
rRNA processing factors
NMD99_04695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WMT83966
LinkDB
All DBs
Position
complement(935045..936808)
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AA seq
587 aa
AA seq
DB search
MANSGKRLLLIENSACSNEVRVALSVNNKVVEFEQEFKEKKQLRGNIYVAYVKRIEPSLQ
AVFIEYGKNKQGFLSFSEISLDYFNIPEKEKEIIFEGYSNDDCTEEASANVSSDSAASKN
VNELGSGFVREVPLYKKYKLQDVISVNQKVLVQLTKEERGNKGASFTTYITLVGRYCVFM
PNSMSKGGVSRRIEDANVRKQLKDILSSINLPKRSGLIVRTVGSGKDKKEIEQDYNYLSS
LWQSIQKNAFSVNAPSLIYNEADVIMRSVRDFCSDGIEVIVSGKEAFEAVRQYTKNALKG
SKLRYRLYRGSIPIFTYYGIEDQISELYSNRVELPSGGSLVITLTEAFVSIDVNSGKMTG
EDSIEETAYRTNMEAVPEISRQVNLRGLSGLIVVDFIDMLKYQYCRAVESAIKQAFKDDK
AKVQFSYINDFGLMVFSRQRIKPNIQEINTTECLHCKGIGRVKSNEVIVASILRDLQHIA
HRNQNKSFDLVAHSAVIAHIFNNKRNTVSTIEKEFNITLNISIDNSLDVNTFVLKQGDDV
NSNGYKPLQNSGYQIEDSSNEEVDNSNKLRGNFWLTKWLSRFLSSNN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaatagtggcaaaaggttattattgatagaaaattctgcctgttctaatgaggta
agagttgccttatcagttaataataaggttgtagaatttgaacaagaattcaaggaaaaa
aaacaattaagaggtaatatatacgttgcttatgtaaagcgtatagagccttctttgcaa
gccgtatttattgaatatggaaaaaacaagcaaggttttttatctttttccgagatatct
ctagattacttcaatattccagaaaaagaaaaggaaattatctttgagggctactcaaat
gacgattgtacagaagaagcttcagcaaatgtttcttcagattctgcagctagtaagaat
gtcaacgagttaggtagtggttttgtaagagaggtacctttatataaaaaatacaaatta
caagatgttatttcagtaaatcaaaaagtattggtccagctaactaaagaggaacgaggc
aataaaggagcttcatttacaacatacataactttagtgggtagatactgtgttttcatg
ccaaattccatgagtaaaggtggagtgtctcgcagaattgaagatgctaatgtcagaaag
cagttaaaggatatactgagttcaataaacttgccaaaaagatcaggtttaatagtaaga
actgttggttcaggaaaagataagaaagaaattgagcaggattacaattacttatcctca
ttatggcagagcattcaaaaaaatgccttctctgtaaatgctccatcattaatttacaac
gaagcagatgtaattatgagatctgttcgtgatttttgtagcgatggtatagaagtcata
gtatctgggaaggaagcttttgaagcagtgagacaatatactaaaaatgcattaaaaggt
agtaagttgcgttacagattgtatagaggttctatcccaatctttacttactatggaatc
gaagatcaaatttctgagttatatagcaatagggtagagttgccatctggtgggtctttg
gtaataactttaactgaggcgtttgtttcaatagacgtaaattcaggaaagatgacagga
gaagatagcatagaagaaacagcttatagaaccaatatggaagcagtacctgaaatatca
agacaggtgaatcttaggggcctatcaggattaatagtagtcgattttattgacatgttg
aaatatcagtattgcagagctgttgagtctgctataaagcaagcgtttaaagacgataaa
gctaaagttcaatttagctacataaatgactttggtttaatggtattttcaagacaaaga
attaaaccaaacatacaagaaattaatactacagagtgtttacactgcaagggtattgga
agagtaaaatcgaacgaagtaattgttgcatcgatactaagggatttacaacacattgct
cataggaaccaaaataagtcttttgatttagtagcgcatagtgcggttatagcgcatatt
tttaataataaaaggaatacagtttctacaatcgaaaaagagtttaatattacattgaac
attagtattgataacagtttagatgtaaatacatttgttttaaaacaaggagatgatgtt
aattcaaacggttataagccattacagaactctggataccaaattgaggatagcagcaat
gaagaagttgataattcaaataaactacgaggcaatttttggctgactaaatggctttcg
cgctttttaagttctaataactaa
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