Wolbachia endosymbiont of Chrysomya megacephala: CAI20_03955
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Entry
CAI20_03955 CDS
T07637
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
wem
Wolbachia endosymbiont of Chrysomya megacephala
Pathway
wem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAI20_03955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wem03019
]
CAI20_03955
Messenger RNA biogenesis [BR:
wem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CAI20_03955
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QEK89836
LinkDB
All DBs
Position
complement(829707..831341)
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AA seq
544 aa
AA seq
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MNINKNEFLFLPLGGVGRIGMNVSLYHYQGKWIMIDLGIGFADETMPGVELLIADVDFIA
QRKKDLLGIIITHAHEDHCGAVPHLWEDLQCPIYTTKFTVNFLKEKLKEFRLEGVVPVKE
VDINGSINLGPFTVEFINVTHSIPEANSILISTEAGSALHTGDWKFDPKPVVGLISNIER
LKEIGDKGDLLAAICDSTNILSKHDPESESEIYDNIYNIIKRSKKLVAVSLFASNVARIE
TISQAAKALNRKVVLLGRSLWRIVKVAQDSGYLTDSPEFLEAKEAVNFPREKLVLLCTGC
QGEPLAATARLASKSHQAFKMQQGDTMIFSSKIIPGNETRAHNTLNAFIEMGVEVITEKT
ENVHASGHPVKAELREMYSLIKPKMSIPVHGEYIHTDAHVKFAKECGVKKAIMIAPGDIV
NLENGEKVSSIDVDYFGIDGMLLRHPECSVIKMRERMRDAGAIVVTAVVNKKNKLLAKPK
VFAPGVFEAQKDAAIMQKIIKKVESAFDSQPIKKIRNKIESSIFIILKEYLLKRPIIEVQ
IEQV
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgaacataaacaaaaatgagtttttatttcttcctcttggaggagtaggaagaattggg
atgaacgttagcctatatcattatcaaggcaagtggattatgatcgaccttggtatcggt
tttgcagatgaaactatgccaggtgttgagctactcattgctgatgtagattttattgct
caaagaaaaaaagatttgcttggaataataattacacatgcacatgaagatcactgtggt
gcagtgcctcatctgtgggaagatttgcaatgtcccatatatacaacaaagtttacagtt
aattttctcaaggagaaactaaaggagtttcgattggaaggtgtggtacctgtgaaagag
gtagacataaatggcagcataaatttgggtccttttaccgttgagtttataaatgtaact
cactcaattcctgaggcaaattcaatattaattagcactgaagcaggtagtgcacttcat
actggggactggaaatttgatccaaaacctgttgttggattaatttctaatatagagcgt
ttaaaagaaattggcgataaaggtgatctacttgcagcaatttgtgattcaacaaacata
ctgagcaaacacgaccctgaatcagaaagtgaaatttatgataatatttacaatataata
aagcggtctaaaaaattggttgctgtctcgctatttgcctcgaatgtggcgcgaattgaa
acaataagccaagctgcaaaagcactaaatagaaaagtggttttacttggcagatcttta
tggagaatagtgaaagttgctcaggatagtggttatttaactgattctcctgagtttcta
gaagcaaaggaggcagtaaattttccaagggaaaagctggtgctactttgcacaggttgt
caaggtgagccactggcagctaccgcaagacttgcctctaagagtcatcaagcatttaaa
atgcagcaaggtgataccatgatcttttcatcaaaaatcattcctggcaatgaaactcgt
gcacataacacgctcaatgcctttattgagatgggagtggaagttattactgaaaaaaca
gagaatgttcatgcttccgggcatccagtaaaagcagagctaagggaaatgtattctttg
ataaaacctaagatgtctattccggttcatggtgagtatattcatacggatgcacatgta
aagtttgctaaagagtgcggtgtgaaaaaagcaataatgattgcaccaggtgatattgtt
aatttggaaaatggggaaaaagttagctccattgatgtcgactactttggtattgatggt
atgttactccgtcatccagaatgcagcgttataaaaatgcgtgagagaatgagagatgcc
ggagctatcgtagtgacagcagttgtaaacaagaaaaataaactgcttgctaagccaaaa
gtatttgcacctggtgttttcgaagcgcaaaaagatgcagccattatgcaaaagatcata
aagaaggttgagtcagcatttgactcacagccgataaaaaaaataagaaataagattgaa
agttcaatatttattatcttaaaggaatatttactaaaaagacctataattgaagtccaa
atagaacaggtatag
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