Wolbachia endosymbiont of Drosophila simulans wHa: wHa_10800
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Entry
wHa_10800 CDS
T02640
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
wen
Wolbachia endosymbiont of Drosophila simulans wHa
Brite
KEGG Orthology (KO) [BR:
wen00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
wHa_10800 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wen03021
]
wHa_10800 (rpoD)
Transcription machinery [BR:
wen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
wHa_10800 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_ner
Sigma70_r1_2
DDE_Tnp_ISL3
DUF1993
Sod_Ni
Motif
Other DBs
NCBI-ProteinID:
AGK00488
LinkDB
All DBs
Position
complement(1266491..1268443)
Genome browser
AA seq
650 aa
AA seq
DB search
MSTINDAEDKKKIIKDLATKSIKKGGFITFDDINDKLSDENFSSDFIDDAISLLQDSGIN
VLESSEDKEDIPSNSDDSKLDDDDTSPNVTATLVQNDDPVRIYLQDMSSVKLLSRADEIE
IAKKIESEKHNMLRAIIETSVTLKVIKVWRDDLSNGALLLREIIDLDAIYNSDFNVVPKE
ESEESEESAEDVEDSEDVSEDAEYCSDDEKDSKKSDDEKDGNNEDISSVNLNVSILEMES
DLLPKVIVALDEIITLTNEALILRKNSKNSSNELENLYNQIWSIALQIKLSDAAVARITQ
ELYKINRSITLEEANLIAEARKYDIDRESFYKVYDDVLLKHELKKISLLKINENQSSFTG
ELKNKFLRFIDDNSEHIASTLNGIKQHIQEDNVQEFKELIKRIQKHEREVSEAKQEMIKA
NLRLVVSIAKKYSKRGLDLLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRA
IPEQSKVVRIPVHMVEIISKINRALRKMTHEMGREPTLEELSVELTMPLERIRKVMKIAR
DPVSLEAPTGKDDSSTFGDCIEDKRVSRPEDAAILADLRGITTNVLATLTPKEERILRMR
FGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLKHPSRARKLRGFF
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactattaatgatgcagaagataagaaaaaaattatcaaagatctggcaactaag
agtataaaaaagggtggttttatcacctttgatgatataaatgataaattatcagatgaa
aatttttcgtctgactttatagatgatgctatatctttattgcaggattccggaattaat
gtgcttgaaagtagcgaagataaagaagatattccttccaacagtgatgatagtaaactt
gatgatgatgacacatcgccaaatgttactgcaactttagtacaaaatgatgatccagtg
aggatttatttacaagacatgagctccgtaaagcttttatcaagggcagatgaaatcgag
atagcaaaaaaaattgaatctgaaaagcataacatgttacgtgcaataattgaaacatca
gtaacattaaaggtgataaaagtatggcgtgatgatttaagtaatggagctctcttactg
agagaaattatagatctggatgcaatttataactctgattttaatgtggtacccaaagaa
gaaagtgaagagagtgaagaaagtgctgaagatgttgaggattctgaggatgtttctgaa
gatgctgagtactgtagtgatgatgagaaagatagtaaaaaaagtgatgatgagaaagac
ggtaataatgaagatataagttcagtcaatttaaatgtttctattcttgaaatggaaagt
gacttattgccaaaggtcatagttgcattggatgagataattactttaacaaatgaagcg
ttgatattaagaaaaaattctaaaaattcctctaatgagctagaaaatttgtataatcaa
atatggtctatagcattacaaattaagttaagtgatgctgctgttgccagaattacacaa
gaactttataagataaatagatccattacgcttgaagaggctaatcttattgctgaggct
agaaaatacgatatcgatagagaaagtttctataaagtttatgatgacgtgcttttaaag
cacgaattgaaaaagataagtcttttaaagatcaatgaaaatcagtcctcttttacaggt
gaattaaaaaacaaatttttaaggtttatagacgataactctgaacatatagctagtacc
ttgaacggtattaagcagcatatacaggaagataacgtacaagaatttaaggagctaatc
aagagaatacaaaaacacgaacgagaagtctctgaagcaaagcaagaaatgattaaggct
aacttaaggctagtagtttccattgctaagaagtattcaaaaagaggccttgatctgctt
gatttgatacaagaaggcaatattggtcttatgaaggccgtggataagtttgattacaaa
cgtggatataaattttcaacttatggcacttggtgggtaagacaatcaatcactagagca
atacctgagcagtctaaagtagttagaataccagttcatatggtggaaattatcagtaaa
atcaacagagcattaagaaagatgactcatgagatgggaagagagccgacgttagaggaa
ttgagtgtagaactgacaatgccactggaaagaatacgcaaagttatgaaaatagcaagg
gatccagtaagtcttgaagctccaacaggaaaagatgatagtagtacctttggtgattgt
atagaagacaagcgagtctccaggccagaggatgctgcaatacttgctgacttgcgtggc
attacaaccaatgttcttgcaactttaacaccaaaggaagaaagaattttaagaatgcgt
tttggccttggtaaagatgggaaggaacataccttagaagaagtaggaaaaatttttaat
gtaacacgtgagagaattaggcaaatagaggcaaaagcactgcgcaagttgaaacatcca
agccgtgctagaaaacttagagggttcttttaa
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