Wolbachia endosymbiont of Frankliniella intonsa: M3L71_01705
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Entry
M3L71_01705 CDS
T09319
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
wend
Wolbachia endosymbiont of Frankliniella intonsa
Brite
KEGG Orthology (KO) [BR:
wend00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
M3L71_01705 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wend03021
]
M3L71_01705 (rpoD)
Transcription machinery [BR:
wend03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
M3L71_01705 (rpoD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_ner
Sigma70_r1_1
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WGJ62742
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Position
complement(296467..298365)
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AA seq
632 aa
AA seq
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MSTINGAEDRKKIIKDLVTKSIRKGGFITFDDINDKLSDESFPPDFIDDTIALLQDSGIN
ILESSEDEEEAPSNDDGNKLDDDETSLNTTTTLVQNDDPVRIYLQDMSSVKLLSRADEIK
IAKKIESEKHNMLRAIIETSVAFNMIKTWRDDLSGGTFLLREMINLDAIYNSDFNMVAKE
ESEAEDVKDYVDDEEKGNDEKGNESEDISSANLNISVLEMESDLLPKVITALDEIITLTN
EALVLKKNSKDFSNELENLYNQIWSVALQIQFSDAAIARITQKLYEINRLITFEEANLIT
EARKYDIDRESFYNIYCAVLLEHELSEISLLKKNENHSLFTGELKNKFLRFINDNYEYIA
SALRNIKSYVQGDKVQEFKELIKRIQKNEREVSEAKQEMIKANLRLVVSIAKKYSKRGLD
LLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVKQSITRAIPEQSKVVRIPVHMVEII
SKINKALRKMTHGMGREPTLEELSIELAMPIERIRKVMKIARDPVSLEAPTGKDDSSTFG
DCIEDKRVSKPEDAAILADLRGITTNVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKI
FNVTRERIRQIEAKALRKLKHPSRAKKLRGFF
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactattaatggtgcggaagataggaaaaagatcatcaaagatcttgtaaccaaa
agtataagaaagggcggttttatcacttttgatgatataaatgataagttgtcagatgaa
agttttccacctgattttatagatgatactatagctttattgcaagactctggaattaac
atactcgaaagtagtgaagatgaggaagaagctccttctaatgatgatggtaataagctt
gatgatgatgagacatcgttgaatactactacaactttagtgcaaaatgatgatccagta
aggatttatttacaagatatgagctctgtaaagcttttgtcacgagcagatgaaattaag
atagcaaaaaaaattgaatctgaaaagcataacatgttacgtgcaataattgaaacatca
gtggcattcaacatgatcaaaacatggcgtgatgatttaagtgggggaacttttttgctg
agagaaatgataaatctagatgcaatttataactctgatttcaatatggtagccaaagaa
gaaagtgaagctgaagatgttaaagattatgttgatgatgaggaaaaaggcaacgatgaa
aagggaaatgagagtgaagatataagttcagcgaatttaaacatttctgttcttgaaatg
gaaagtgatttattgccaaaggttatcacagcattggatgagatcattactttaacaaat
gaagcattggtattgaaaaaaaattctaaagatttctctaatgagctagaaaatttatat
aatcaaatatggtctgtagcattacaaattcagtttagtgatgctgctattgccagaatt
acacaaaaactttacgaaataaatagactaatcacgtttgaagaagctaatcttattact
gaggctagaaagtacgatattgatagagaaagtttctataatatttattgtgctgtgctt
ttagagcacgaattgagcgaaatcagtcttttaaagaagaatgaaaatcattcccttttt
acaggtgaattaaaaaataaattcttaaggtttataaacgataactatgaatatatagct
agtgccttaagaaatattaagagttatgtacaaggagataaagtacaagagtttaaggag
ctaatcaagagaatacaaaaaaacgaacgagaagtctctgaagcaaagcaagagatgata
aaggctaatttaaggctagtggtttcaattgctaaaaagtattcaaaaagaggacttgat
ctacttgacttgatacaagaaggcaatattggtcttatgaaggctgtagataagtttgat
tacaaacgtggatataaattttcgacttatggtacttggtgggtaaaacaatcaataact
agggcaatacctgaacagtctaaagtagttagaataccagttcatatggtggaaattatc
agtaaaatcaataaagcattaagaaagatgactcatggaatgggtagagagccaacatta
gaggaattaagtatagaattggcaatgccgatagaaagaatacgtaaagttatgaaaata
gcaagagatccagtaagtcttgaagctccaacaggaaaggatgatagtagtaccttcggt
gattgtatagaagataagcgagtttctaaaccagaggatgctgcaatacttgccgacttg
cgtggcattacgaccaatgttcttgcaactttaacaccaaaagaagaaagaattctaagg
atgcgctttggccttggtaaagatggaaaggagcataccttagaagaagtaggaaaaatt
tttaatgttacacgtgaaagaattaggcaaatagaggcaaaagcactacgtaagttgaag
catccaagccgtgctaaaaaacttagaggtttcttttaa
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