Wolbachia endosymbiont of Frankliniella intonsa: M3L71_05485
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Entry
M3L71_05485 CDS
T09319
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
wend
Wolbachia endosymbiont of Frankliniella intonsa
Pathway
wend03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wend00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M3L71_05485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wend03019
]
M3L71_05485
03009 Ribosome biogenesis [BR:
wend03009
]
M3L71_05485
Enzymes [BR:
wend01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M3L71_05485
Messenger RNA biogenesis [BR:
wend03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M3L71_05485
Ribosome biogenesis [BR:
wend03009
]
Prokaryotic type
rRNA processing factors
M3L71_05485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WGJ61785
LinkDB
All DBs
Position
complement(985667..987424)
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AA seq
585 aa
AA seq
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MASDGKRLLLIESTTCSNEVRVALLVNGRVVEFEQEFKEKRQLRGNIYVAYVKRIEPALQ
AVFIEYGKNKQGFLSFSEISLNYFNIPEKEKEIFPDEGYSRGVDCSNDNCTEEGLDSTAS
NESSSGFVREVPLHRKYKLQDVISVNQKLLVQLTKEERGNKGASFTTYVTLVGRYCVFMP
NSISRGGVSRRIEDTNVRKQLKDILNSINLPKGSGLIVRTVGAGKSKKEIEQDYDNLTLL
WQNIQQNFSSLNVPSLIYNEADVVMRSVRDFCSNDTEIIVSDREVCEAVRKYTKNVLQGK
LRPRLYRGSVPIFTYYRVEDQISELYSNRVELPSGGSLVITLTEAFVSIDVNSGKMTGED
NIEETAYRTNMEALSEISRQANLRGLSGLIVVDFIDMLKLEYCKNVEFAIKQAFKDDRAK
VQFSFINDFGLMVFSRQRIKPNIQEINTTECLRCKGIGRVKSNEVVVASILRDLQHIASK
NQNKSFDLIARSAVIAHIFNNKRDMVSTIEKEFNITLNVSIDNSLDADTFILKQGDHINF
NDYKPLQNSGCKIVNSRNKESGSSDKLPGNFWLTKWLSRLLGSNN
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
gtggctagtgatggcaaaaggttattattgatagaaagtactacctgttctaacgaggta
agggttgccctactagttaatggtagggttgtagagtttgaacaagaattcaaggaaaaa
agacaattaagaggtaatatatacgttgcttatgtaaagcgtatagagcctgctttgcag
gccgtgttcattgagtatggaaaaaataagcaaggttttttgtctttttctgagatatct
ctaaattactttaatattccagaaaaagagaaggaaattttccctgacgaaggctattcg
agaggtgtggactgttcaaatgataattgcacagaagaaggcctagattctacagctagt
aatgaatccagcagtggttttgtgagggaggtacctttacatagaaaatataagttacaa
gatgtgatttcagtaaatcaaaagttattggttcaattaactaaagaagaacgaggaaat
aaaggagcttcatttacaacatacgtaactttggtcggtagatactgtgttttcatgccc
aattccataagtaggggtggagtatctcgcagaattgaagataccaacgttagaaaacag
ttaaaggatatattaaattcaataaatttaccaaaaggctcaggtttaatagtaagaact
gttggtgcaggaaaaagtaagaaagaaattgagcaagattacgataatttgaccttatta
tggcaaaatatccagcaaaacttctcttctttaaatgttccatcattaatttacaacgaa
gcagatgtagttatgagatctgtacgtgacttttgtagtaatgatacagaaattatagta
tctgatagagaagtttgtgaagcggtaagaaaatacactaaaaatgtgttacaaggaaaa
ttacgtcctaggttatatagaggctctgttccaatcttcacttactatcgagtcgaagat
caaatttctgaattatatagcaatagagtagaattaccatctggtgggtctttggtgata
accttaactgaggcatttgtttcaatagacgtaaattcagggaaaatgacaggagaagat
aacatagaagaaacagcttatagaactaatatggaggcattatctgaaatatcaaggcaa
gcgaatctcaggggcttatcagggttaatagttgttgattttattgacatgttgaaactt
gagtattgcaaaaatgttgaatttgctatcaagcaggcgtttaaagatgatagagctaaa
gttcaatttagctttatcaatgactttggtttaatggtcttttcaagacaaagaattaaa
ccaaatatacaggaaattaatactacagagtgcttacgctgtaaaggtattggaagagtg
aaatcaaacgaagtggttgttgcatcgatactaagggatttgcaacatattgctagtaaa
aatcaaaataagtcctttgatttaatagcacgcagtgcagttatagcgcacatttttaat
aataagcgtgatatggtttctacaatcgaaaaagagttcaatattacattaaatgttagt
attgataatagtttagatgcagatacatttattttaaagcaaggagaccatattaatttt
aatgattataagccattgcagaattctggatgtaaaattgtgaatagcaggaataaagaa
tctggtagttcagataaactaccgggcaacttttggttaactaaatggctttcgcgcctt
ttgggatctaacaactaa
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