Wolbachia endosymbiont of Liriomyza huidobrensis: ACFDSB_02055
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Entry
ACFDSB_02055 CDS
T12115
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
wenl Wolbachia endosymbiont of Liriomyza huidobrensis
Pathway
wenl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wenl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACFDSB_02055 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wenl03021
]
ACFDSB_02055 (rho)
03019 Messenger RNA biogenesis [BR:
wenl03019
]
ACFDSB_02055 (rho)
Transcription machinery [BR:
wenl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACFDSB_02055 (rho)
Messenger RNA biogenesis [BR:
wenl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACFDSB_02055 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_22
AAA_25
AAA
ATPase_2
OB_RNB
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
XHX52375
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All DBs
Position
complement(402695..404098)
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AA seq
467 aa
AA seq
DB search
MTTINEDVLAKGKVTAQPEKSEQIYNNDTVKQMVNEGTEKNRKTLDLSELKEKTAEELLE
LAEERKISTNGKSNGRMLKQEIIFSLMKKMSEEGGITTGSGIVEILPDGFGFLRSASANY
APSTDDVYISNGQIKKFNLRTGDMAYGEIRPPGDKERYFTLTKVQSINSTEVSELRKYVH
FDNLLPLYPEESIVLECNNGDDKKGLSMRAIDIVAPLGKGQRALVVAPPRTGKTVLLQQM
ANSIAINHPEVELIVLLIDERPEEVTDMIRSVKGEVVSSTFDEPAYRHVQLAEIVIEKAK
RMVEHKKDVVILLDNITRLARAYNAVIPSSGKVLTGGVDSNALQRPKRFFGAARNIENGG
SLTIIATALIETGSKMDEVIFEEFKGTGNAEIILDRKLSDKRIFPAIDITKSGTRKEELL
VDKAILNKIWVVRRILNPMGPVEAMEFLRDKLLLTKSNADFFNSMNY
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaatcaatgaagatgttttggcaaaaggaaaggttacagctcaacctgaaaaa
agtgagcaaatttacaataacgatacagtaaaacagatggtcaatgaaggtactgagaaa
aacagaaaaacattagatctgagcgaattaaaagagaaaacagcagaagaattgttagag
ttagctgaagaaagaaaaatttcaactaacggtaaaagcaatggtagaatgctaaagcag
gaaataatattcagcttaatgaaaaaaatgagtgaagaaggaggcataaccacagggagt
ggaatagtggaaatattgcctgatggttttggtttcttacgttcagcaagtgcaaattat
gccccaagtaccgatgatgtttatatttctaacgggcaaataaagaagtttaatttacgt
acaggagatatggcatatggagaaataaggccacctggtgataaagagagatattttact
ttaactaaggttcaaagtataaactctactgaagtaagtgaattaagaaagtacgtccat
tttgataatttgcttcctctttatcctgaggaaagcatagtacttgagtgtaataatggt
gatgataaaaaaggcttaagcatgcgtgctatagatatagtagctcctcttggaaaaggg
caaagagcgttagtagttgctccacctcgcacaggaaaaactgtattgcttcagcaaatg
gctaactctatagctataaatcaccctgaagtagaattaatagtgttacttatagatgaa
agacctgaagaagtaacagatatgatacgttctgtaaaaggtgaggtagtaagttctaca
ttcgatgagcctgcttaccgtcacgtacagcttgctgaaatagtaatagaaaaagctaaa
agaatggttgagcataaaaaagatgtggtaattctacttgacaatattactagacttgca
cgtgcttataatgcggttattccttcgtctgggaaagttctaactggtggtgtagattca
aacgcactgcagagaccaaaacgcttttttggagcagctcgtaatattgagaatgggggt
tctttaactataatcgccacagctcttatagagactggttcaaaaatggatgaagttatt
tttgaagagtttaaaggtacaggaaatgctgagatcatacttgatagaaaactttctgat
aaacgtatatttccagctattgatattacaaaatccggaacaaggaaggaagagctatta
gttgataaggctatactaaataaaatatgggtggtgcgtaggatacttaatcctatggga
cccgttgaagcaatggaatttttacgtgacaaactacttttaacaaagagcaatgctgac
ttttttaactccatgaattactaa
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