Wenzhouxiangella sp. AB-CW3: IC757_01420
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Entry
IC757_01420 CDS
T08427
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
wez
Wenzhouxiangella sp. AB-CW3
Pathway
wez02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
wez00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IC757_01420 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wez03021
]
IC757_01420 (rpoD)
Transcription machinery [BR:
wez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IC757_01420 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QOC22855
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Position
343165..345057
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AA seq
630 aa
AA seq
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MSKAEASDMDNSPRPSQLKQLIQKGREQGQWLTYAQVNDHLPGDIVDPEQIEDIVNMIND
MGIKVFEEAPEDADALILNDSASTDADDEAAQQDAEAALAAVESELGRTTDPVRMYMREM
GSVSLLTRDDEIDIAKRIEDGLNQVNMALSRFPGTVEVLLEEVEAWKEGNLRLNELISGF
INPELLAEMDLISEDTMEAAVAEEAEYIDEDDEEEDEDKPAPTVNTLPDPEQVTQFFDEL
EKLHQHFVKLYDRYGASGKKAGETKDSISEQFLRLKLPPRLFDMLILRMRLHVARVRDIE
RAIMAVCVERAGMPRKEFITSFRDNASDPEWLAGLLRRRSDWAKTLRDYEDEIAELQAKL
ARFERDQRIPVGQLLEINREMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDL
IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLN
RISRQMLQEMGREPTPEELAVRMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIE
DANILSPIDTATTTGLTDTVQKVLSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTR
ERIRQIEAKALRKLRHPTRSEQLRSFLDLE
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagccgaagcaagcgacatggacaactcaccgcgaccctctcagctcaagcag
ctgatccagaaaggacgtgagcagggccagtggttgacctacgcccaggtcaatgaccac
ctgcccggcgatatcgtcgatcccgagcagatcgaggacatcgtcaacatgatcaacgac
atgggcatcaaggtgttcgaggaagcgcctgaagatgccgatgcgctgattctcaacgac
tcagccagcaccgatgccgatgatgaggccgcccagcaggatgccgaggcggcactggcc
gcggtcgaaagcgagttgggccgcaccaccgacccggtgcgcatgtacatgcgcgagatg
ggttcggtatcgctgctgacccgcgatgacgaaatcgatatcgccaagcggatcgaggac
ggtctgaaccaggtcaacatggctctttcgcgctttcccggcacggtcgaggtgctgctg
gaagaggtcgaggcctggaaggaaggcaatcttcgcctcaacgagctcatcagcggtttc
atcaatcccgaattgctggccgagatggatttgatctccgaggacaccatggaagcggcg
gtggccgaggaagccgaatatatcgatgaagacgacgaagaagaggacgaggacaagccg
gcccccacggtcaacacattgcccgaccccgaacaggtcacgcaattcttcgacgagctg
gaaaagctgcaccagcatttcgtcaagctctacgaccgctacggcgcctcgggcaagaaa
gccggtgaaaccaaggacagtatttccgagcagtttctgcgcctgaagctgccgccgcgc
cttttcgacatgctgattttgcgcatgcggctgcacgtggcgcgggtgcgcgatatcgag
cgcgccatcatggcggtttgcgtcgagcgcgccggcatgccgcgcaaggaattcatcacc
agcttccgtgacaatgcctccgaccccgaatggctggccggcctgctgcgtcgtcgcagc
gactgggccaagaccctgcgtgactacgaagacgagattgccgagcttcaggccaagctg
gcccgattcgagcgcgaccagcgcattccggtcggacaattgctcgagatcaaccgcgaa
atgtccatcggcgaggccaaggcacgccgggccaagaaggaaatggtggaagccaacctg
cgcctggtcatttcgattgccaaaaaatacaccaatcgtggccttcagttccttgacctg
atccaggaaggcaacattggcctgatgaaagcggtcgacaagttcgaataccgtcgcggc
tacaagttctcgacctatgccacctggtggatccgccaggccatcacccgctcgattgcc
gaccaggcccgcaccatccgtatcccggtgcatatgatcgaaacgatcaacaagctcaat
cgcatctcgcgtcagatgctgcaggagatggggcgcgaaccgaccccggaagagctggcg
gtacgcatggaaatgcccgaagacaaggtgcgcaaggtgctcaagattgccaaggagccg
atttcgatggagactccgatcggcgatgacgaggactcgcacctgggcgatttcatcgag
gatgccaacatcctctcgcccatcgataccgccaccaccacgggtctgaccgataccgtg
cagaaggtgctttccggattgacgcctcgagaagccaaggtgctgcgcatgcgctttggc
atcgacatgaataccgaccacacgctcgaggaagtcggcaagcagttcgacgtcacccgc
gagcgcattcggcagatagaggccaaggcgctcagaaagctgcgccatccgacccgttcg
gagcaactcagaagcttcctcgatctggagtga
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