Wenzhouxiangella sp. AB-CW3: IC757_07570
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Entry
IC757_07570 CDS
T08427
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wez
Wenzhouxiangella sp. AB-CW3
Pathway
wez03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IC757_07570 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wez03400
]
IC757_07570 (mfd)
Enzymes [BR:
wez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IC757_07570 (mfd)
DNA repair and recombination proteins [BR:
wez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IC757_07570 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
AAA_30
UB2H
AAA_25
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QOC23954
UniProt:
A0A7H4GRE2
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All DBs
Position
complement(1745792..1749214)
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AA seq
1140 aa
AA seq
DB search
MSTPFSVLNPPRSASETVDWPLLDGLALALALSTHAARKGGPLLVAAPDGYAARRLRDDL
NQFGGPKAELFPDWEILPYDLYSPHPDLVSRRLDLLARLPGMTDGIVIAPMTALMQRLPP
VAWVQGQSLNLAVGERIDMASFRDTLHAAGYAPSEQVWQPGQFAVRGAVLDLWPMGRPDP
YRLELFDDEIESIRIFDAESQRSTEKLERIDMLPAREYPFDEDSRQAFRRAFRMRFDVDL
RRALPYIEVGEGHHSQGLEQYLPLFFEHTASLPDYLPAEHRLVMLAGVEESANDYATRIH
QRHEQRRGDLERPCLNPDELFLPAAELMGVMKADADVRIIRRQAAKAAIETPPTVDLDHE
ADQAAKKLAELPGRVLVAADTAGRRELIHDNLKSAGLKPKLLDSWSAFLSGEDRLALTVM
PVSGGVSLPDRGITVLTEAELFPGHTRTIRRERRSGQDPESMVKSLADLQPGALVVHLEH
GIGCYLGLEVLDSGDTTAEYLCLEYADEDKLYVPVTDLHLVSRYTGADPEMVDLHRLGSE
KWQRTRRKAAEKVRDAAAELLNLQARRAARRGHAFPVDRGLYARFAAGFEYEETEDQLDA
IEAVIADLASEEPMDRVICGDVGFGKTEVALRAAFVVAESGRQVAMLAPTTLLAEQHYRN
FADRFADWPVNVRLLSRTGKQTANIVTGLTDGTVDIVIGTHKLLQKDIKFRDLGLVIVDE
EQRFGVRQKERLKALRAEVDLLTLTATPIPRTLNMSMAGLRELSIIATPPARRLAVRTFV
SEWDSGTIRDAVSREFQRGGQVYYLHNEVRSMARQVADLQEMFPEARIGMAHGQLPPGEM
EKTMRDFYSRRINLLVCSTIIENGIDVPTANTIIINRADKFGLAQLHQLRGRVGRSHHLA
YAYLVTPPWKVITRDAQKRLEAIQSLEELGAGFTLANHDLEIRGAGELLGEEQSGQIEAI
GFSLYSDLLNRAVEALKNGEEPDLDEPMSITSEVDLHLTAMIPDSYLPDVHQRLVLYKRI
TQADSDKKLHDLQVEMIDRFGLLPPEVKNLFATAELRLRARKLGMKRLEVGPAGGRVEFQ
SKPDIDMGELLKMIQKESHTFELPDNDKLRVKGEFESPEDRFHMAEELLERLTPGERAVA
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgccattctccgtcctcaatccgccacgctccgccagtgaaacggtcgactgg
cccctgctcgacggactggcgcttgccctggccctgtccacccatgccgcgcgcaagggt
ggtccattgctggtggcggcccccgacggctatgccgcgcgccggctgcgcgacgatctc
aaccagttcggcggcccgaaagccgagctgttcccggactgggaaatcctgccctacgac
ctgtattcgccgcaccccgatctggtctcgcgccggctggacctgctcgcgcgcctgccc
ggcatgacagacggcatcgtcatcgcaccgatgaccgcgctcatgcagcgcctgccgccg
gtggcctgggtgcagggccagagcctgaatctcgcagtaggcgaacgcatcgacatggcc
tctttccgcgataccctgcacgcggccggctatgcaccttccgagcaggtctggcaaccc
gggcaattcgccgtgcgcggggcggtgctcgacctgtggcccatgggccggcccgatccc
taccggctggaattgttcgacgacgagatcgaatccatccgcatcttcgatgccgagagc
cagcgctcgaccgagaagctggaacgcatcgacatgctgccggcacgcgagtacccgttc
gacgaggacagccgccaggccttccggcgcgccttccgcatgcgtttcgatgtcgacctc
cggcgggccctgccctatatcgaggtgggcgaaggacaccacagccaggggctggaacag
tacctgccgctgtttttcgaacacactgcctccctgcccgattacctgccggccgagcac
cgtctggtcatgctggccggcgtcgaggaatcggccaacgattacgccacccgcatccac
cagcgtcatgaacagcgccgcggcgacctcgagcgcccctgcctgaatcccgacgagctg
tttctgcccgccgcagaactgatgggggtgatgaaggccgatgccgacgtgcgcatcatc
cgccgccaggcggcgaaggccgcgatcgagactccaccgaccgtggacctcgaccacgag
gccgaccaggccgcgaagaaactcgctgaactgcccggacgcgtcctggtggccgccgat
accgccggccgccgcgagctgatccacgacaacctgaaatcagccggactcaaaccgaag
ctgctcgactcctggtcggcctttctgagtggcgaagacaggttggcactgacggtcatg
ccggtatccgggggtgtcagcctgcccgaccgcggcatcaccgtgctgaccgaggccgaa
ctgtttcccggccacacccgcaccatccggcgcgaacgacgcagcggccaggacccggaa
agcatggtcaagagcctggccgatctccagcccggcgccctggtggtgcacctggaacat
ggcatcggctgctacctcggcctggaagtgctcgattcgggcgacaccaccgccgagtat
ctgtgcctggaatatgccgacgaggacaagctctacgtgccggtcaccgatctgcacctg
gtcagccgctacaccggcgccgatccggagatggtcgacctgcaccgcctgggctcggaa
aagtggcagcgcacccgccgcaaggcggccgagaaagtccgcgacgccgccgccgaactg
ctcaacctgcaggcccggcgcgccgcccgccggggtcatgcctttcccgtcgatcgcggc
ctgtatgcccgcttcgccgccggcttcgaatacgaggaaaccgaggaccagctcgacgcc
atcgaggcagtcatcgccgacctggcttccgaggaacccatggaccgggtcatctgcggc
gatgtcggcttcggcaagaccgaggtcgccctgcgcgcggccttcgttgtcgccgaatcg
ggccggcaggtggccatgctcgcccccaccaccctgctggccgaacagcactaccgcaac
ttcgccgaccgcttcgccgactggccggtgaatgtcagactgctctcgcgcaccggcaag
cagaccgccaacatcgttaccggactgaccgacggcacggtcgacattgtcattggcacc
cacaagctgttgcagaaggacatcaagttcagggatctgggcctggtcatcgtcgacgag
gaacagcgcttcggcgtgcgccagaaggaacgactcaaggcgcttcgggccgaggtcgat
ttgctcacgcttaccgccacgcccattccgcgcacactcaacatgtccatggccgggctg
cgcgagctgtccatcatcgccacgccgccggcccggcgcctggccgtacgtacctttgtg
tcggaatgggacagcggcaccatccgcgatgccgtcagccgcgagttccagcgcggcggc
caggtctactacctccacaacgaagtgcgcagcatggctcgccaggtcgccgacctgcag
gagatgttccccgaggcgcgcatcggcatggcccacggccagctgccaccgggcgaaatg
gaaaagaccatgcgcgatttctactcgcgccgcatcaacctgctggtgtgctcgaccatc
atcgaaaacggcatcgacgtgcccaccgccaacaccatcatcatcaaccgcgccgacaag
ttcggcctggcgcagctccaccagctccgcggccgggtcggtcgctcgcatcacctggcc
tatgcctacctggtcaccccgccgtggaaagtcatcacgcgcgatgcccagaagcgcctg
gaagccatccagtcactggaagaactgggcgcgggtttcaccctggccaaccacgacctg
gaaatccgcggtgccggcgaactgctgggcgaggaacagtccgggcagatcgaggcgatc
ggcttctcgctctactccgacctgctcaaccgcgccgtcgaagcactgaagaacggcgag
gagcccgacctggacgaaccgatgtcgatcaccagcgaggtcgatttgcacctgaccgcc
atgattccggacagctacctgcccgacgtgcaccagcgcctggtgctctacaagcgcatc
acccaggccgacagcgacaagaagctgcatgacctgcaagtcgaaatgatcgaccgcttc
ggcctgctgccgcccgaggtcaagaacctcttcgccaccgccgagctcaggctccgggcc
aggaaactgggcatgaagcgcctggaagtcggaccggccggcggccgcgtcgagttccag
tccaagcccgacatcgacatgggcgagctgttgaaaatgatccagaaggaatcccacacc
ttcgaactgcccgacaacgacaagctgcgcgtcaagggcgagttcgaatcgcccgaggac
cgcttccacatggccgaggagctgctggagcgactgacgccgggggagcgggcagtggcc
tga
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