Wenzhouxiangella sp. AB-CW3: IC757_08570
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Entry
IC757_08570 CDS
T08427
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
wez
Wenzhouxiangella sp. AB-CW3
Pathway
wez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IC757_08570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wez03019
]
IC757_08570
03009 Ribosome biogenesis [BR:
wez03009
]
IC757_08570
Enzymes [BR:
wez01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IC757_08570
Messenger RNA biogenesis [BR:
wez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IC757_08570
Ribosome biogenesis [BR:
wez03009
]
Prokaryotic type
rRNA processing factors
IC757_08570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QOC21114
UniProt:
A0A7H4GIA2
LinkDB
All DBs
Position
1956951..1959722
Genome browser
AA seq
923 aa
AA seq
DB search
MKRMLINATQPEELRVAIADGQTLLDLDIEVPAQEQKKANIYKGRITRVEPSLDACFVEF
GSERHGFLSMKEISREYFSEAAIKQLEAGERVEIKDAVSGGQEIIVQVDKEERGTKGAAL
TTFISLAGRYLVLMPNNPRAGGVSRQITRDERKELLETLSAIRIPEGMGAIVRTAGVGRD
SEELQWDLDYLLHLWSAIQEAARSRKAPFLIYQESNLIIRALRDYLREDIGEILIDDEKV
FEDAREFMQQVMPHNLRKLKTYNDATPLFSRFQIESQIESAFAREVRLPSGGALVIDHTE
ALLSIDINSARATKGADIEETALQTNLEAADELARQLRLRDLGGLVVVDFIDMMSKDAQR
QVENRLRDAMRMDKARVQIGRISRFGLLEMSRQRLRPSLGESSYITCPRCDGYGAIRSIE
SLALSILRLAEEESMKEHTSRVIVQAPIEVGNFLLNEKRDAMAELEQRNKVPITIVANRY
LETPRFDIQRLRSSESIDEPSYALATGEDLEATAGQGDVQGQAAPPPPPPPAAVSGVRPR
APAPARKNDGFIARLIAVLRGWFGGGDDGEGRKQRGKQRRHDRKRSGKAVSGQHRRPNRG
KPQDGKGKSGPEKSGSPARKKKGSKKKAAQARKGPDDSNRPSDGGTPEAPKKKKKRRRRG
GKKRRARGDGQQQDAGSGKEQHSQGSDKAQQNQGSGKEQQSQAEPQSHKRQQKQSQQKSR
PPQTDSPGKGEQASGSEGKVGGKEQSGQKADDTASSSPTTAPAAQQPVRNQDDAAKRKEP
STKSHTGAAENSRNETPAPAAEPKKAPEDSKSTSERSKQRADDQKPDNSRSGESSADKTS
PQQQGEKPSSPSKTSADGGKQSVAGESSTKASSDSGESRKDKKPAPDPASSNSRKADSES
RPQAVPEGGGIYRLNKDGEDKKD
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaacgcgactcagccagaagagttgcgcgtggccattgccgat
ggccagaccctgctggacctcgacatcgaagtcccggcccaggaacagaagaaagccaac
atctacaagggccgcatcacgcgtgtcgaaccgagcctggacgcctgtttcgtcgaattc
ggatcggagcggcacggttttctgtcgatgaaggaaatcagtcgcgagtacttcagcgag
gcggcgatcaagcagctcgaggccggtgagcgagtcgagatcaaggacgcggtgtccggt
ggccaggagatcatcgtccaggtcgacaaggaagagcgtggcaccaaaggtgcggcactg
accaccttcatcagcctggcagggcgctacctcgtgctgatgccgaacaatccccgtgcc
ggcggcgtgtcgcgccagatcacccgtgatgaacgcaaggagctgctcgaaaccctgagc
gccatccggattcccgagggcatgggcgccatcgtgcgaaccgcgggcgtcggccgcgac
agcgaagagctgcagtgggacctcgactacctgctgcatctgtggagcgccatccaggag
gcggcgcgctcacgcaaggccccctttctgatctaccaggaaagcaacctgatcatccgt
gcgctgcgcgactacctgcgcgaggatatcggtgaaatcctgatcgacgacgaaaaggtc
ttcgaggacgcacgcgagttcatgcagcaggtcatgccgcataatctgcgcaagctcaag
acctacaacgacgcgaccccgctgttctcccgattccagatcgaaagccagatcgagtcg
gcttttgcccgcgaggtgcgactgccgtcgggcggcgccctggtcatcgaccataccgag
gcattgctgtcgatcgatatcaactcggcccgagccaccaagggggccgatatcgaagag
accgcgctgcagacgaatctggaagcggccgacgagctggcccgccagttgcggcttcgt
gacctgggcggtctggtggttgtcgatttcatcgacatgatgagcaaggacgcgcagcgt
caggtcgagaatcgtctgcgtgatgccatgcgcatggacaaggcgcgggtacagatcggg
cgcatttcgcggttcggtttgctggagatgtcgcgtcagcgactgaggccgtcactgggt
gaatccagctatatcacctgccctcgctgcgacggatacggtgccattcgttccattgaa
tcgctggcgctgtcgatcctgcgcctggccgaagaggaatcgatgaaggaacacacctca
cgggtcatcgtgcaggcacccatcgaggtcggcaacttcctgctcaacgaaaagcgcgat
gccatggccgagctggaacagcgcaacaaggtgccgatcaccatcgtcgccaatcgctac
ctggaaaccccgcgtttcgacattcagcgcctgcgcagcagcgaatcgattgacgagccg
agctacgccctggccaccggggaggacctggaggccacagccggacaaggggatgtacag
ggtcaggcagcgcctccgccgccaccaccgccggctgcagtcagcggcgttcggccacgt
gcaccggccccggcccgcaagaacgatggtttcatcgctcgcttgatagccgtgttgcgc
ggctggttcgggggtggcgacgatggcgagggccgcaaacagcgcggcaagcagcgccga
cacgatcgcaagcgatcgggcaaggccgtcagtggccagcatcgacgcccgaatcgaggc
aagccacaggacggcaaaggcaagtcgggaccggagaagtccggttctccggcgcgcaag
aagaagggcagcaagaagaaggcagcccaggcccgcaagggaccggacgattccaaccgc
ccgtcggatggtggcacgcccgaagcacccaaaaagaagaagaagcggcgtcggcgcggt
ggcaagaaacgccgcgctcgcggcgatggtcagcagcaggatgctggttcgggcaaggaa
cagcacagtcaaggctcggacaaagcgcagcagaaccaaggctccggaaaagagcagcag
agtcaggctgagccacagagccataagcggcaacagaagcagtcgcaacagaagtcacgc
ccgccgcagactgattcgcctggcaagggcgaacaggctagcggcagcgaaggcaaggtt
ggcggcaaggagcagagcggtcagaaagccgacgacaccgcatcgagcagcccgacgact
gcgcctgccgcgcagcagccagtccgaaatcaggatgatgcagcgaagcggaaagagccg
tcgaccaagtcgcacaccggggctgctgagaacagcaggaatgaaaccccagcgcccgct
gccgagccgaagaaggcgccagaagacagcaagtctacttccgaacgctcgaagcagcgt
gctgacgatcagaagcccgacaattctcggagcggggagtcatcggcggacaagacatcg
ccacagcagcaaggtgaaaagccctcctcgccgagcaagacatccgcggatggcggcaag
caatccgtggccggtgagagcagcacaaaggcatcctcggacagcggcgaatcgcgcaag
gacaagaagccggcaccggaccctgctagcagcaacagccggaaggccgactccgaatca
cgtccacaggcggtgcccgaaggtggcggcatctaccgcctgaacaaggacggcgaagac
aagaaagactga
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