Wenzhouxiangella sp. AB-CW3: IC757_12790
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Entry
IC757_12790 CDS
T08427
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
wez
Wenzhouxiangella sp. AB-CW3
Brite
KEGG Orthology (KO) [BR:
wez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wez03019
]
IC757_12790 (hrpA)
Enzymes [BR:
wez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IC757_12790 (hrpA)
Messenger RNA biogenesis [BR:
wez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IC757_12790 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
WHD_HA2
AAA_22
HA2_C
AAA_19
nSTAND3
AAA_25
nSTAND_NTPase5
AAA_30
T2SSE
SRP54
NAT10_TcmA_helicase
NACHT
ABC_tran
AAA_29
Motif
Other DBs
NCBI-ProteinID:
QOC21898
LinkDB
All DBs
Position
complement(2949846..2953679)
Genome browser
AA seq
1277 aa
AA seq
DB search
MSKIPTFDPAEVMQRDIAWLKRRHKQLARFRGPADKREKLLAGYEQRLGQSQAQREARRE
NRPDTGEPPDLPISAHAETIVETIRDHQVVIVAGETGSGKSTQLPKLCLQAGRGERGLIG
CTQPRRIAARSVARRVAEELGTELGQAVGFQVRFTDQVSDQSYIKFMTDGILLAEVHRDR
LLDGYDTLIIDEAHERSLNIDFLLGYLKRLTKRRPDLKIIITSATIDTERFARHFDDAPV
ITVEGRSYPVEVRYQEQGDGEDLPRQVRRAVDTVSRIDSRGDILVFLPGEREIFQVSRAL
KRANLSHTEVLPLYARLPAGQQDRIFKTGTGRRIVLATNVAETSLTVPGIRFVIDSGLAR
ISRYAAHSRVLRLPVEPVSQASCNQRAGRCGRVGPGTCIRLFDEADFESRPEFTEPEIQR
AGLVGVLLEMLALGLGDPEDFPFVDSPPRRLIGEAWQSLVELQAVDENRRITKLGRRLAR
LPVDARHGRMLIEAAERGALAEALVLIAALSIADVRDRPLDQQQAADQAHAQFVVPGSDF
LTLLKMWRWWQETRAELSRSKADRTAKAQFLAPQRLHEWGQLHGQLKQIAREEGWKPGKL
GDADDDDVHRSLLAGLLAMIGQHQEKGEYQGARGHKFRIFPGSVLAGRNPGWIMAAELVE
TARPYARMVAPVKPEWLEQQGGHLLKSRVFDPWWDRRSGRVMGYEQVSLHGLVLVEKRRV
HYGPHDPPTARALFIRHALVRGEMHSRAEFLKRNEALRRELAEHEHKRRRRDVLAAEAEL
EAFFDQHLPADLYTAKAFGRWYESLSRDERERLLYDRATLLRDQAPLAGQDAFPESLDTG
PERFRLHYHFDPAADNDGVTLDCPLHLLNQLDTDRLQWLVPGLLEEKVTALIASLPKSRR
RSLVPAAEYARAALESLGAPEGSLLERLADELSRMSGMTIEAGDFKLDKLPRHLHFLVRV
RGEGGRLLGSSRDPGALIERFSDQARREFMDRQAGQWQRDGLGPGDFPELPEIITTRGGH
KAWPALVDQGRQAGVRLFDTVEEARQAHFDGLAALLQVALKDKWKYLGRDHGLSREAQLA
WTRVEDVSSLTESLRRLALRTFLADAWQVRDADAFHRLQTEIRQQLIERYRSAASDLDAC
LLQWHELSLRLDGLEDAAPRAVADMRSQLDDLMYAGFPDDIQADRLAHYPRYLQALAQRL
DALEIDPVRDDQRMAEISPWWHRYLEYLGDGGWYTPALDRFRWLVEEFRVQVFAQRLGTD
GKVSRKRLEQAWSDVEQ
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagattccgaccttcgacccggcagaggtgatgcagcgcgatatcgcctggctg
aagcgtcgccacaagcaactggcacgatttcgcggcccggccgacaagcgcgagaagctg
ctggccggctacgagcagcggctgggccagtcgcaggcgcaacgcgaggcgcgccgggaa
aaccggccggataccggcgagccgccggacctgcccatatcggcccatgccgagaccatc
gtcgagacgattcgcgaccaccaggtggtgatcgtggccggcgagaccggttcgggcaaa
tccacccagttgcccaagctgtgcctgcaggccggacgcggcgagcgggggctgattggc
tgtacccagccccggcgcattgccgcgcgctcggtggcccggcgtgtggccgaggaattg
ggcaccgaactgggccaggctgtgggtttccaggtgcgattcaccgaccaggtctcggat
cagagctatatcaagttcatgaccgacggcattctgctcgccgaagtgcatcgtgaccgc
ctgcttgatggctacgacaccctgatcatcgacgaggcgcatgagcgcagcctcaacatc
gatttcctgctcggctatctcaagcgcctgacaaagcgccggcccgatctgaagatcatc
atcacttcggcgaccatcgataccgagcgcttcgccagacacttcgatgatgcgccggtc
atcaccgtggaaggtcgcagttatcccgttgaggtgcgttaccaggaacagggtgacggt
gaagatctgccgcggcaggtcaggcgggcggtcgataccgtcagccgtatcgactcgcgt
ggcgacattctggtgtttctgcccggtgagcgtgagatctttcaggtctcgcgtgcactc
aaacgcgccaatctttcgcacaccgaagtgctgccgctttacgcccgcctgccggccggg
cagcaggaccggattttcaagaccggcacgggccggcgcatcgtcctggccaccaacgtg
gccgagacctcgctgaccgtgccgggtattcgcttcgtgatcgattccggcctggcacgc
atctcgcgctatgccgcgcactcgcgcgtgctgcgcttgcccgtcgagccggtgtcgcag
gcctcctgtaaccagcgtgccggacgttgcggccgcgtcggcccgggcacctgtatccgt
ctgttcgacgaggccgatttcgaatccagaccggagttcaccgagccggaaatccagcgt
gccgggctggtgggcgtgctgctggagatgctggccctggggctgggtgatccggaagat
tttccattcgtcgactcgccaccccgacgcctgatcggcgaggcctggcagagcctggtg
gagctccaggcagtcgatgaaaaccgtcgtatcacgaaactgggtcgtcggctggcgcgc
ctgccggtcgacgcccgccacggtcgcatgctgatcgaggcggccgagcgcggcgcgctg
gccgaagccctggtgctgattgccgcgctgtcgattgccgatgtgcgcgaccgtccgctg
gaccagcagcaggctgccgaccaggcccatgcccagttcgtggtgccggggtcggatttc
ctcacgcttctgaaaatgtggcggtggtggcaggaaacgcgagccgagctgtcgcgcagc
aaggccgaccggaccgcgaaagcacagtttctggccccgcagcgtctgcacgagtggggg
cagttgcacggccagctcaagcagatcgcgcgcgaggaaggctggaaacccggcaagctg
ggtgatgccgatgacgacgatgttcatcgcagcctgctcgccggcctgctggcgatgatc
ggccagcaccaggaaaaaggcgagtaccagggcgcgcgcggccacaagttccgcatcttt
cccggttcggtactggccggtcgcaatccgggctggatcatggccgccgagctggtggag
accgcgcggccttatgcccgcatggtcgccccggtcaagcccgaatggctggagcagcag
ggcgggcatctgctcaagtcacgcgtgtttgatccctggtgggaccgccgctcaggtcgg
gtcatgggctacgagcaggtcagcctgcatggcctggtgctggttgaaaagcgccgtgtt
cactatggcccgcacgatccgccgacggcccgggcactgttcatccgacacgccctggtg
cgtggcgaaatgcattcccgggccgagtttctcaagcgtaacgaggcgctccggcgggag
ctggccgaacacgagcacaagcggcgccggcgtgatgtgctggccgccgaggccgagctg
gaagcattcttcgatcagcatctgccggccgatctgtatacggcaaaggccttcggccgc
tggtatgaatcgttgagccgggacgaacgcgagcgcttgctgtacgaccgcgctaccctg
ctcagagaccaagcgcccctggccgggcaggacgcctttcccgaatcgctggacacgggg
ccggaacggttccggctgcactatcacttcgatcccgccgccgacaacgacggtgtgacc
ctggactgtccgctgcacctgctcaaccagctcgataccgatcgtctgcagtggctggtg
ccgggattgctggaagaaaaggtcaccgcgctgatcgccagcctgcccaagtcccggcgt
cgctcgctggtcccggccgccgagtatgcccgcgccgcgctggagtcgctgggcgcaccc
gagggctcactgctcgagcgactggccgatgagctctcgcgcatgtccggtatgaccatc
gaggcgggtgacttcaagctcgacaagctgccccggcacctgcatttccttgttcgcgtg
cgtggcgaaggcggccgactgctgggcagcagccgtgaccccggagccctgatcgagcgc
ttcagcgatcaggcccggcgcgagttcatggatcgacaggccggccagtggcagcgcgac
ggcctgggtccgggcgacttcccggagctgcccgagatcatcaccacgcgcggcgggcac
aaagcctggccggcgctggtggaccagggtcggcaggccggtgtgcgcctgttcgacacg
gtggaggaagccaggcaggcccattttgacggccttgccgcactgctccaggtcgcgctc
aaggacaagtggaaatacctggggcgcgatcacggcctgtcgcgcgaggcccagctggcc
tggacccgtgtcgaagatgtttccagtctgaccgaatcattgcgccggctggccctgcgc
acttttctggccgacgcttggcaggtgcgtgatgccgacgcctttcaccgcctgcagacc
gaaatccgtcagcagttgatcgagcgctaccgctcggcggccagcgacctggatgcctgt
ctgctccaatggcacgagctgtccctgcgactcgacgggctggaggatgccgcaccccgt
gccgtagccgacatgcgctcgcagcttgacgatctcatgtacgccggtttcccagacgat
atccaggccgaccggcttgcccattatccccgctacctccaggccctggcgcagcgcctt
gacgcgctggagatcgatccggtgcgcgatgatcagcgcatggccgagatttcgccctgg
tggcaccgctacctggagtacctgggagacggcggctggtacacgccggcactggaccgg
tttcgctggctggtcgaggaatttcgtgtccaggtctttgcccagcgcctgggtaccgac
ggcaaggtgtctcgcaagcggctggagcaggcctggtcggacgtggaacaatag
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