Wenyingzhuangia fucanilytica: AXE80_02295
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Entry
AXE80_02295 CDS
T04444
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
wfu
Wenyingzhuangia fucanilytica
Pathway
wfu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
wfu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXE80_02295 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wfu03021
]
AXE80_02295 (rpoB)
03400 DNA repair and recombination proteins [BR:
wfu03400
]
AXE80_02295 (rpoB)
Enzymes [BR:
wfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXE80_02295 (rpoB)
Transcription machinery [BR:
wfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXE80_02295 (rpoB)
DNA repair and recombination proteins [BR:
wfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXE80_02295 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
YqfD
Motif
Other DBs
NCBI-ProteinID:
ANW95182
UniProt:
A0A1B1Y328
LinkDB
All DBs
Position
512453..516265
Genome browser
AA seq
1270 aa
AA seq
DB search
MATKNNTRVNFASAKLSTEYPDFLDIQIKSFQDFFQLKTKADERSDEGLYKTFMDNFPIT
DTRNNFVLEFLDYFVDPPRYSIEECIERGLTYSLPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTNSGTFIINGAERVIVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFNLAEEVKVSKSGLKKVLGRKL
AARVLRTWFEDFVDEDTGEVVSIERNEIVFDRDTILDKEHIDEIVDTGVKTILLHKEDNE
SGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIEKLFFSEQRYNLGEV
GRFRMNKKLGLNESLDQKVLTKNDIITIIKNLIELVNSKAEIDDIDHLSNRRVRTVGEQL
AAQFGVGLSRMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYAK
VNNLGFIETAYHKVDEGKVNIVDAPTYLSAEEEEGMKFAQSNIDIADDGQINLEKVIARE
EADYPVVTPQDIDYMDVSPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLSPEAP
IVGTGLERRVAKDSRILINAEGTGEVIYVDANKITIRYERTEEEASVSFDSNEISYNLIK
FRKTNQGTSINLKPIVKVGDTVEEGQVLCEGYATQKGELALGRNMKVAFMPWQGYNFEDA
IVISEKVVREDIFTSIHIDEYSLDVRDTKLGAEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIGKKLFK
KAVKDKSKRVRDKEQIEALEAQFTHDFESLKDSLIDKLFTLISGKTSQGVQNDLGEEVFP
KGKKYTLKMLNSVTDFTHLTKGAWTTDDHLNNLVAELIHNYKIKVSDLQGALRRKKFAIT
IGDELPAGVLKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEEMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKLDQTYATPIFDGAKLDQINTLTDEAGIPRFGHTY
LYDGGTGERFDQPATVGIIYMIKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSILREILTVKSDDVIGRAKTYEAIVKGEPMPEPGLPESFNVLMHELK
GLGLDVRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
ttggcaacgaaaaataatacaagagttaactttgcttcagccaaactaagtacagaatat
ccggactttttagatattcagattaagtctttccaagactttttccagttgaaaactaag
gctgacgaaagaagcgatgaaggtttgtataaaactttcatggacaattttccaattact
gacacacgtaataactttgtgttagaatttttagactattttgtagatccacctagatac
tcaattgaagagtgtattgagcgtggtttgacttatagtttaccattaaaggcaagatta
aaattgtactgtacagatcctgaacatgaggatttcgaaactattgtacaagatgtgtat
ttgggaactatcccttacatgactaattcgggtacctttattattaacggagctgagcga
gtaatcgtttctcagttacaccgttcaccaggggtattctttggacaatctttccatgca
aacggtacaaaattatattctgcaagagtaattccttttaaaggatcttggatagaattt
gctaccgatatcaatcaagtgatgtatgcttatattgatagaaagaaaaaattacctgtt
actactttattccgtgcaattggatttgaaagagataaggacattttagagatttttaac
cttgcagaagaagttaaagtttctaagtctggattaaagaaagtattaggaagaaaatta
gctgctcgtgtattaagaacttggtttgaggacttcgttgatgaagatactggagaagtt
gtatctattgagcgtaatgagatcgtttttgatcgtgatacgattttagataaagaacat
attgatgagattgttgatactggtgtaaaaacaattttattacataaagaagataatgaa
agtggagattacgcaattatccacaacacattacaaaaggatcctacgaactctgaaaaa
gaagcagtagagcatatctatagacaattacgtaatgctgagccgccagatgaggaaact
gcaagaggaattattgaaaaattattcttctctgagcaacgttacaacttaggtgaagta
ggacgttttagaatgaacaaaaagttaggattaaatgagtctttagaccaaaaagtttta
actaagaatgatattatcactattatcaagaacttaattgagttagttaactcaaaagca
gaaattgatgatattgaccacttatctaacagacgtgtacgtacagtaggagaacaatta
gcagctcaatttggagttggattgtctcgtatggctcgtactattagagaaagaatgaac
gttcgtgataacgaagtgtttacaccgattgacttaattaacgcgaagactttatcttct
gtaattaactctttctttggaactaaccagttatctcagttcatggaccaaacaaacccg
ttagctgaaattactcacaaacgtagattgtctgcattaggacctggaggtttatctaga
gagagagcaggatttgaggttcgtgacgttcactatactcactacggtcgtttatgtcct
attgaaactcctgaaggtccaaacattggattgatttcatctttagcagtatatgcaaaa
gtgaacaatttagggtttatagaaacagcataccacaaagtagatgaaggaaaagttaat
attgttgacgctcctacctatttaagtgctgaagaagaagaaggaatgaagtttgcacaa
tcaaacattgatattgcagatgacggacaaatcaacttagaaaaagttattgctcgtgaa
gaggctgattatccagttgtaactccacaagacattgactatatggatgtatctccaaac
cagattgcatctatttctgcttcgttgattcctttcttagaacatgatgatgcgaaccgt
gccttgatgggatctaacatgatgcgtcaggcagtacctttattaagtccagaagctcct
attgtaggaactggattagagcgtagagttgcaaaagattcaagaatcttaatcaacgca
gaaggaactggtgaggttatttatgtagatgctaacaagattaccattcgttatgaaaga
actgaagaagaagcttctgtaagttttgattcaaacgaaattagctacaacttaattaag
tttagaaaaaccaaccaaggaacttctatcaacttaaagccaattgtaaaagttggtgat
actgttgaagaaggacaagtattgtgtgaaggatatgctactcaaaaaggtgaattagcc
ttaggacgtaacatgaaagtagcctttatgccttggcaaggatataactttgaggatgcg
attgtgatttctgaaaaagttgtaagagaagatatatttacttctatccacattgatgag
tactctttagatgtaagagatacaaaattaggagcagaagaattaaccaatgatatccct
aacgtttctgaagaggctacaaaagacttagatgaaaacggaatgattcgtattggtgct
gaagtgaagcctggtgatattttaattggtaagattactcctaaaggagagtcagatcca
acacctgaagaaaaattattacgtgctatctttggagacaaagctggtgatgtaaaagat
gcttctttaaaagcttctccatcattaagaggagttgttattggtaagaaattgtttaag
aaagctgttaaggataaatctaagagagttagagataaagagcaaatagaggctttagaa
gcacaatttactcatgactttgaatctttaaaagatagtttaatagacaagttgtttact
ttaatttctggtaaaacatctcaaggtgttcagaatgatttaggagaagaagtattccct
aaaggtaaaaagtatactttaaaaatgttaaactctgttacagactttacacatttaact
aaaggagcttggactacagatgatcacttaaacaacttagttgctgaattaattcacaat
tataaaattaaagttagcgatttacaaggagcattaagacgtaagaaatttgccattact
attggagatgaattaccagcaggtgtcttgaaattagctaaagtttatattgctaagaaa
cgtaagttaaaagtaggagataagatggcaggacgtcacggtaacaaaggtattgttgct
cgtattgtacgtcaagaagaaatgcctttcttagaagatggaacaccagtagatatcgta
ttgaatccattaggggtaccatctcgtatgaacattggacagatttatgaaactgtttta
ggatgggcaggtcaaaaattagatcaaacgtatgcaacaccaatttttgatggagctaaa
ttagatcaaattaacaccttaactgatgaggcaggaattccaagatttggacatacttac
ttatacgacggaggaacaggagaacgttttgaccaaccagcaactgtaggtattatctac
atgattaagttaggtcacatgattgatgataagatgcacgcgcgttctattggaccatac
tctttaattactcaacagccattaggaggtaaagctcaatttggaggtcagcgttttgga
gagatggaagtatgggcattagaagcttatggagcatctagtatcttacgtgaaatttta
actgtgaaatctgatgatgttattggtagagcgaaaacttacgaggcaatcgtaaaagga
gaaccaatgccagaaccaggtttaccagaatctttcaacgtattaatgcacgaattgaaa
ggtttaggattagacgtaagattagaagaataa
DBGET
integrated database retrieval system
