Weissella hellenica: EFA59_05515
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Entry
EFA59_05515 CDS
T06311
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
whe
Weissella hellenica
Pathway
whe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
whe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFA59_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
whe03019
]
EFA59_05515
Messenger RNA biogenesis [BR:
whe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EFA59_05515
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
P8
Motif
Other DBs
NCBI-ProteinID:
QDJ59011
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Position
complement(1143183..1145111)
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AA seq
642 aa
AA seq
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MAITLDIMPFGGVRENGMNMYAVTVNDEIFILDAGLKYPESDLLGVDVVIPDYAYLIEHA
DNVAGVFLTHGHADAIGALPYLLSDLRVPIFGSELTIELAKLAIHNEPRLKDYDDYHVVK
GNSEVSFDDATVSFFETTHTIPESLGIVIETAAGQVVYTGDFKFDTTALPYYRTDLLRLA
EIGQKGVLALLADAAGTANFGMPDHESDLGDYILENFYLHKQGRIIVAAVASNIQRIQQV
IDAAYKVGRKVVISGNDLERVVRTALRLKKLVLPIPENEMFVSLKNLGKLAADETVILET
GKMGEPIRHLQRIAHGDDRNIKIQPNDLVFITTTPSTAMEGYVARTRDMLFRAGATVKQI
STDKKSSGHASKEDFQLLMNLLKPQNIIPVQGEYRVLNEAYRAAEQVGYDEDHVFLLAKG
DKLRWDGEKFYLGGSIQVTSTMIDGSGVGDIGSIVLNDRRILSEDGVFIAVITIDRKKKK
VIAPAKIDSRGFVYVKTSRDLMHEAAELVEQTVTDGVKNAKDFDWGNLKNAVRDALGKFL
FEKTRRKPVILPVIMEANQNGRRRRRTSAQQSNQNKANNGTKDKTTKKTVNNKKKANKKP
GQVNKVATNVVKQKPNKNRRPKKNKNNGQNNQVKQNEASNKK
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggcaattacattagatattatgccgtttggtggtgttcgtgagaatggaatgaacatg
tacgccgttacggttaatgatgagatatttattttagatgcaggattaaagtatcctgaa
agtgacttattgggagtagatgttgtcatccctgactatgcttatttaattgagcatgct
gataacgtggccggagtctttttaacacatgggcacgcagatgcaattggggctttgcct
tatttgctttcagacttacgtgtaccaatatttggttctgaattaacgattgagttagca
aaattagcgattcataatgaaccacgtttaaaagattacgatgattatcatgtggtaaaa
ggaaattcagaagttagttttgatgatgcgacagtctcgttttttgaaacaacacacaca
attccagagtcattaggaattgttatcgaaacagcagccggacaagttgtttatacgggt
gactttaagtttgatacgacagcattaccatattatcgaacagatttattacgcctagct
gaaattggtcaaaaaggtgtgttagcactgttggctgatgctgctggtacagctaatttt
ggtatgcctgatcatgaatctgacttaggtgattacatcttagaaaacttttacttacat
aaacaaggacgtattatcgttgctgcagttgcatcaaacatacaacgaattcaacaagta
attgatgcagcttataaagtggggcgtaaggttgttatttctggcaatgatttagaacgt
gttgttagaacggcattacgtttaaaaaagttggttttgccaatccctgaaaatgagatg
tttgtttcattaaaaaatcttggtaagttagcagcggacgagaccgttattttagaaact
ggtaaaatgggtgaaccaattcgtcacctacaacgcattgcgcatggtgatgatcgtaac
attaaaattcaaccaaatgatttagtgtttattacgacaacgccttcaacggcaatggaa
gggtatgtagctagaacacgtgatatgttattccgtgcaggagctactgttaagcaaatt
tcaacggataaaaaatcttcaggtcatgcttctaaagaagattttcaattattgatgaat
ttgttaaaaccacaaaatattattcctgtccaaggtgaatatcgtgttttgaatgaagcc
tatagagctgctgaacaagttggttatgatgaggaccatgttttcttacttgctaagggt
gataaactacgttgggatggagaaaagttttatttgggtggctctattcaggtgacatca
acaatgattgatggatcaggtgtgggcgatattggatcaattgttcttaatgatcgtcgc
attttgtcagaagatggggtgtttattgcggttataacgattgatcgtaagaaaaagaaa
gtaattgcacccgcaaaaatcgattcacgtggttttgtctatgttaaaacatcacgcgat
ttaatgcatgaagcagctgaattagttgaacagacagttacagatggcgttaagaatgct
aaagattttgactggggtaacttaaaaaacgcagttcgtgacgctttaggtaaatttttg
tttgaaaaaacacgacgtaagcctgttattttgcctgttattatggaagcaaaccaaaat
ggtcgccgccgccgtcgtacctcagctcaacaaagtaatcagaataaggctaataacgga
acaaaagataagactactaaaaaaacggttaataataaaaaaaaggctaacaagaagcca
ggccaagttaataaggtagctactaacgttgtaaaacaaaagccgaataaaaatcgccgt
ccaaaaaagaacaaaaataatggtcaaaataatcaagtgaagcaaaatgaagctagcaat
aaaaagtaa
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