Weissella hellenica: EFA59_08090
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Entry
EFA59_08090 CDS
T06311
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
whe
Weissella hellenica
Pathway
whe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
whe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EFA59_08090 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
whe03021
]
EFA59_08090 (rpoC)
03400 DNA repair and recombination proteins [BR:
whe03400
]
EFA59_08090 (rpoC)
Enzymes [BR:
whe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EFA59_08090 (rpoC)
Transcription machinery [BR:
whe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EFA59_08090 (rpoC)
DNA repair and recombination proteins [BR:
whe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EFA59_08090 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QDJ59472
LinkDB
All DBs
Position
complement(1619419..1623075)
Genome browser
AA seq
1218 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDYEC
ACGKYKRIRYKGIVCDRCGVEVTSAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTKPGDTSLTEKQLLSEREYRQLKSEYGNAFEAGMGAEAVQTLLS
NVDLEEEVTELKAQLREATGQKRVRAVRRLDIIEAFVKSGNKPEWMVMDVIPIIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPGIIVQNEKRMLQEAADALVDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPRP
MAMELFRPFIMKELVKRDLAGNIRAAKRKIDRHDEDVMDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKAMRLHPLVTEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAGHIL
APKDGKPIVAPSQDMVIGNYYLTTEEAGREGEGMIFKDLNEVRTAYQNKYVHLHTRIGIQ
TASLPAEKPFTAEQRSRIMMTSVGKLFFNDILPVDFPYLNEPTEANLHEIDNRFFLEPGE
DIKARYAETPILPPFKKGYLSDIIAEVYKIYKVTETSLLLDRMKDLGYDESTKSGLTVGV
SDVTDLKEKPEIIEDAHKQVATVTKQFRRGLITDSERYERVIAIWNKAKDDITEKLIEHF
EPDNNIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIIANFREGLSVLEMFFST
HGARKGMTDTALKTADSGYMTRRLVDVAQDVIIREDDCGSDRGLDVSAIMNGNEVIESLY
ERILGRYAQKSVFDPQTGDKLVGHNEMITEDIAKRIVEAGITTVTIRSAFTCNTEHGVCV
RCYGRNMATGDVVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVAGNDITQGLPRVQEIF
EARNPKGRAMITEVTGEVTTIEENPADRTKEVTIQGETDTRTYTLPMSSRMRVGEGDHIH
RGETLNEGSADPKEIIQVRDTLATENYIVLEVQKVYRMQGVEISDKHIEVMARQMLRKVR
VMDPGETDLLPGTLMDIAQFRDANEGTLLKGGLPATGRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKNDPLVGLKENVIIGKLIPAGTGMKQYQEIAGKVVADPIITASEED
NNMPTSIADIESAMNLTK
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtcaataagtttgaaagtatgcaaatcggtctggcaagcccagataagatt
cgcagctggtcttacggtgaagtaaaaaagcctgagacaatcaactaccgtacacttaag
cctgaaaaagatggtcttttcgatgaacgtatcttcggacctacaaaagattatgaatgt
gcttgtggaaagtacaagcgtatccgttataagggcattgtttgtgaccgttgtggggtt
gaagtaacctcagctaaggttcgtcgtgagcgcatgggtcacattgagttggctgcacca
gtatcacatatctggtatttcaagggtatcccatcacgtatgggactcgttttggacatg
tcaccacgttcacttgaagaagttatttactttgcttcatacgttgttactaagccaggg
gatacatcactaactgaaaagcaattgctatcagaacgtgagtatcgtcaattaaagtct
gaatatggtaatgcttttgaagctggtatgggtgctgaagctgtccaaaccttgttatca
aatgttgacttggaagaagaagttacagaactaaaggcacaattgcgtgaagcaactggt
caaaagcgtgtccgtgctgttcgtcgtttggacatcatcgaagcgtttgtaaagtctggt
aacaagccagagtggatggttatggatgttattccaattatcccacctgacttacgccct
atggttcaacttgaaggtggtcgttttgccacttcagatttgaatgatttgtaccgtcgt
gttattaaccgaaataaccgtttaaagcgtttgctagagctaaatgctcctggtattatc
gtgcaaaacgaaaagcgtatgttgcaagaagcagctgatgctttggttgataatggtcgt
cgtggtcgtccagttactggtcctggtaatcgtccattaaagtcactatcacacatgctt
aagggtaagcaaggacgtttccgtcaaaacttgcttggtaagcgtgttgattactctggt
cgttcagttatcgacgttggtcctttcttgaagatgaaccaaatgggactaccacgccca
atggcaatggaattgttccgcccatttattatgaaggaattggttaaacgcgatttggca
ggtaatattcgtgccgctaagcgtaagattgatcgtcatgatgaagatgttatggatgtt
ttggaagatgttatcaaggagcacccagttctattgaaccgtgcaccaacgttgcaccgt
ttgggtattcaagcattcgagccagtattagtttctggtaaggcaatgcgtctacaccca
ttggtaactgaagcttataatgccgactttgatggggaccaaatggctattcacgtccca
ctatcagatgaagcacaggctgaagcacgtttgctaatgttagctgcgggccacattttg
gcacctaaagatggaaagcctatcgtggcgccatcacaggacatggttatcggtaactat
tacctaacgactgaagaagctggtcgtgaaggtgaaggaatgatctttaaggatcttaac
gaagttcgtacagcttaccaaaacaagtatgtgcacttgcacacacgtattggtattcaa
acagcttcattacctgctgaaaagccatttactgctgaacaacgttcacgcattatgatg
acttctgttggaaagctattctttaatgatatcttgccagtagatttcccatacttgaat
gagccaacagaagcaaatctacacgaaattgacaaccgtttcttcttggagccaggtgag
gatattaaggcacgttacgctgaaacaccaatcttgccaccatttaagaagggttacttg
tcagacatcattgccgaagtatataagatttacaaggttacagaaacatcattgttgttg
gaccgtatgaaggacttgggttacgatgagtcaacaaagtctggtttgacggtgggagtt
tctgacgttactgacttgaaagaaaaaccagaaattattgaagatgctcacaagcaagtt
gcaactgttacaaaacaattccgtcgtggattgattaccgattcagaacgttatgaacgt
gttattgctatttggaataaggctaaggatgacattactgaaaagctaattgaacacttc
gaaccagataacaacatcttcatgatgtctgattctggagcacgtggtaacatttctaac
tttacacaattggctggtatgcgtggattgatggcagcacctaatggtcgtatcatggaa
ctacctattatcgccaacttccgtgagggactatctgttttggaaatgttcttctcaact
cacggtgctcgtaagggaatgaccgacacggcgctaaagactgccgattcaggttacatg
acacgtcgtttggttgatgtggcacaagatgttattatccgtgaagatgactgtggtagt
gaccgtggcttggatgtttcagccattatgaatggtaatgaagtaatcgaatcattgtac
gaacgtatcttgggtcgttatgctcaaaagtcagtctttgatccacaaactggtgataag
ttggttggtcataacgagatgattacagaagatatcgcaaagcgcattgtcgaagctggt
attacaactgttacaattcgttcagcatttacttgcaacactgaacacggagtttgtgtt
cgttgctacggccgtaatatggctactggtgatgttgttgaagttggtgaagctgtgggt
actgttgctgcacaatcaatcggtgagccaggtacgcaattgacgatgcgtacgttccac
acgggtggtgttgccggaaacgatattacacaaggtcttcctcgtgtgcaagaaatcttt
gaagcacgtaaccctaagggtcgtgcgatgattactgaagttactggtgaagtaacaact
atcgaagaaaaccctgctgatcgtactaaggaagtaactatccaaggtgagacagatact
cgtacttacactttgcctatgtcatcacgtatgcgtgttggtgaaggtgatcatattcac
cgtggtgagacgttgaatgaaggttctgctgatcctaaggaaattatccaagttcgtgat
acattagcaacggaaaactatattgtgcttgaagtacaaaaggtttaccgtatgcaaggt
gttgagatttctgacaagcacatcgaagttatggctcgtcagatgttgcgtaaggttcgt
gtcatggatccaggtgaaacagatctattgccaggtactttgatggatattgcacaattc
cgtgatgctaatgaaggtaccttgcttaagggtggtttgcctgcaacaggtcgtcctgtt
ttgcttggtattacaaaggcctcattggaaactaactcattcttgtcagctgcatcattc
caggaaacaacacgtgtcttgactgatgctgctattcgcggtaagaacgatccacttgtt
ggtttgaaggaaaatgttattattggtaagctaattccagctggtactggaatgaagcaa
tatcaagaaattgcaggtaaggtcgttgcagacccaattattactgcttctgaagaagat
aataatatgccaacttcaattgctgatattgaaagtgctatgaacttaacaaaataa
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integrated database retrieval system
