Williamsia herbipolensis: OG579_19485
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Entry
OG579_19485 CDS
T09708
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
whr
Williamsia herbipolensis
Pathway
whr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
whr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OG579_19485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
whr03400
]
OG579_19485
Enzymes [BR:
whr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
OG579_19485
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
OG579_19485
DNA repair and recombination proteins [BR:
whr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OG579_19485
BRITE hierarchy
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Ribosomal_S13
zf-TFIIB
NFACT_N
TMEM106_N
OrfB_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
WUM19848
LinkDB
All DBs
Position
4188983..4189885
Genome browser
AA seq
300 aa
AA seq
DB search
MPELPEVQAIADYVDGRAAGLPIRRVDVASLAVLKTADPPYSAMAGRIVAGVHRIGKYLV
ISTDPAEAAPTGPDAERDVIHLVIHLSRAGWLRWSSNLSQTPPRPGGKGPIALRVHCGLP
GEGFDVTEAGTQKRLAVWIVRDTAEVERIATLGPDVLSLTRDELAAILGGTGARIKTVLT
DQRVISGVGNAYSDEILHTAQISPFATAKSLSDDQLDRLFVAVNAVLSDAIVRLEGAEVA
TMKGEKRSGLRVHARTGMPCPVCGDTVREVSFTDRAFQYCPTCQTGGKILADRRMSRLLK
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgccggagttgcccgaggtacaggccatcgccgactacgtcgacggacgtgcggccgga
ctaccgatacgtcgcgtcgacgtcgcgtcgctcgccgtgctgaagaccgccgacccgccg
tactcggcgatggccggccggatcgtcgccggtgtccaccgcatcggcaaatacctcgtg
atcagcaccgatccggccgaggcggcacccaccggccccgatgccgagcgcgacgtcatc
cacctggtgatccacctgtcccgcgccgggtggctgcggtggtcgtcgaacctgtcgcag
acaccgccccgccccggcggcaaggggcccatcgcgctccgcgtccactgcgggctgccg
ggtgagggattcgacgtgaccgaggcgggcacccagaaacgcctggccgtgtggatcgtg
cgcgacaccgccgaggtcgaacggatcgcgacgctgggccccgacgtcctgtcgctgacg
cgggacgagctcgccgcgatcctcggcggcaccggggcgcgtatcaagaccgtcctcacc
gaccagcgggtcatcagcggcgtcggcaacgcctacagcgacgagatcctgcacaccgcg
cagatctccccgttcgcgacggcgaaatcgctctccgacgatcagctcgaccggctgttc
gtcgcggtgaacgccgtcctgtccgacgcgatcgtgcgactcgagggcgcggaggtcgcg
accatgaagggcgagaaacggtccggattgcgggtgcacgcgcgcaccggcatgccgtgc
ccggtgtgcggtgacaccgtgcgcgaggtgtcgttcaccgaccgggcgttccagtactgc
ccgacgtgccagaccggcggcaagattctcgccgaccggcggatgtcccgcctgctcaag
tag
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integrated database retrieval system
