Wallemia ichthyophaga: J056_000167
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Entry
J056_000167 CDS
T03457
Name
(RefSeq) Pre-mRNA polyadenylation factor fip1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
wic
Wallemia ichthyophaga
Pathway
wic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
J056_000167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wic03019
]
J056_000167
Messenger RNA biogenesis [BR:
wic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
J056_000167
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
20373119
NCBI-ProteinID:
XP_009265840
UniProt:
R9AXL0
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MDDDDEFLYGDNEDQQEAQQAPPTSLSLAEPPTEVISTTHNEINKVEGIDVRNDTANASN
GSNGSNEDDDQDYSDSESDVEIIMDTPNTSKSIDFRPQRNSLGRTPSQPSLPKPNITTEY
IPQERPSAVTSTPPVKAPSHTPVPQPPTVVDNTIALPSAANVAGTGTTQSTDAPERSLAP
TLAQKSDANDFFLKRAQAMAEDPVDKPTTPSTAPQLDLDPSTLDAATVYDIDVDAVDVEK
PWRQPGADITDWFNYGFDEYKWLEYATRKRSIGGATEKMNPFAPHATTPDELMNVLPPEL
QAMMHMMPPIPQMGGMSGMPGMGMGGMSNLPPAMPGGGMPGMPGMPQMPGMPGMPPGFDM
SMMMGMPMGMQMNQTNSNEVKEEDYGEAKADDNQQRFKNYNDKDKGGAINSALDYSDQPL
VHDDSTNGARSTSKDSDRDYNDRRERSREKDTDLHDKERQPSPSTRFKEKERERGNFRER
ERENKERERERERERARERAKEKEWEREREREKAKGGGRSYNRSRSPPPRFPKERERDRD
RKDFKDSRARERDRDRERDRRERDRRDSDRSSRRPGR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgacgatgaattcctctacggagataacgaggatcaacaagaggctcaacag
gctccaccaaccagcctcagtctggcagaaccaccaacagaagttatttcgactacgcac
aacgaaataaacaaagttgaaggaattgacgtgagaaatgacacggcaaatgcttcaaac
ggttcaaacggctcaaacgaagatgacgatcaagattattcagattctgagtctgacgtt
gaaatcataatggatacgccaaatacttcaaaatctattgactttagaccacaaagaaac
tccttaggcagaactccaagtcaaccttcattgccaaaaccaaacatcactacagagtat
ataccacaagaaaggccttctgctgtaacttcaactccaccagttaaggcaccctcacat
actccggtacctcagccaccaactgttgttgacaacactatcgctcttccttcagctgca
aatgtcgcaggtacaggcacaacccaaagtacagatgctcctgaaaggtctttagctcct
actttagcgcagaaaagcgacgcaaatgacttctttttgaagcgtgctcaagctatggca
gaagatcctgtggataagccgactacgccatcgactgctcctcaattagacttggatcct
tctacattagatgccgcgactgtatatgatatagatgttgatgctgttgatgtcgaaaaa
ccttggaggcagcctggcgctgatattaccgactggttcaactacggctttgatgagtac
aaatggctcgaatacgctacacggaagaggagcattggtggtgcgaccgagaagatgaat
ccatttgctccgcacgctacaacaccagatgaactcatgaatgtattaccaccagagtta
caggcaatgatgcatatgatgccacctataccccagatgggcggcatgtctggtatgcct
ggtatgggtatgggtggtatgtctaatttacctcctgctatgccaggtggaggtatgccc
ggtatgcctggtatgccccaaatgcctggtatgcctggtatgccgccgggttttgatatg
tccatgatgatgggcatgccaatgggtatgcagatgaatcagacaaactccaatgaagtc
aaggaagaagattatggtgaagcaaaagctgatgacaatcaacagcgtttcaagaattac
aacgataaggataaaggtggtgcgatcaactcagctttggactacagcgatcaacctctc
gttcatgatgactccaccaatggtgcaagaagcacttcgaaagatagtgatagagactac
aacgataggagagaacggagcagagagaaagatacggacttgcatgataaggagagacag
ccatctccatcgacgcgtttcaaagaaaaagagcgcgaaagaggcaacttccgggaaaga
gagagagaaaacaaagagagagagagagagagggaaagggagagagccagagaaagagcc
aaggaaaaagagtgggaaagagaaagagagagagagaaagcaaaaggtggaggaagatcg
tacaacagatcacgttcaccacctccaagatttccaaaggaaagggaaagagatagagac
aggaaagatttcaaagattctcgagctagagaacgtgatcgcgatcgtgaaagagatcga
cgtgaaagagatcgccgtgattctgacagatcgtcacggaggcctggcagataa
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