Wallemia ichthyophaga: J056_000194
Help
Entry
J056_000194 CDS
T03457
Name
(RefSeq) Exosome complex component rrp4
KO
K03679
exosome complex component RRP4
Organism
wic
Wallemia ichthyophaga
Pathway
wic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J056_000194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wic03019
]
J056_000194
Messenger RNA biogenesis [BR:
wic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
J056_000194
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
J056_000194
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
EXOSC1
ECR1_N_2
PsaA_PsaB
Motif
Other DBs
NCBI-GeneID:
20373146
NCBI-ProteinID:
XP_009265867
UniProt:
R9AXN0
LinkDB
All DBs
Position
Unknown
AA seq
327 aa
AA seq
DB search
MPFNLAHNTHIETLQPADREEVNDADADIEMDDDDSFPRSKLTSPGDVIASSSAYMHGHG
TYVHNDNIVSNMFGTVERVNKLVSVRPLKHKYIPQVGDLVIGRIVEVQAKRWKVDIHSSS
DAVLMLSSINLPGGVQRRKLESDELQMRNFFTEGDLCVAEVQSFFHDGSVSLHTRSLKYG
KLRNGTLATVPPNLMRRLKSHFYTLPVNVDLIIGLNGSIWVSMHDDVSQDLNLNDDNQGF
DSEGVYNDTNDSIDSQTRESINRTAIVIDILASHRVPLTDTLIATAYDVALDLEQDNGIR
FLSSNEDVQDELVHCALQVEESAMDNA
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcaatttggcgcacaacacgcacatagagacactgcagccagcggacagagaa
gaagtcaatgacgcagacgctgatatagaaatggacgacgatgattctttcccgcgttcc
aaactcacttctccgggcgatgtgattgcgtcgtcgtcggcatacatgcacggacacggc
acatatgttcacaacgataacatcgtttccaacatgttcggcacagtagagcgtgtcaac
aaactcgtttctgtacgtccactaaaacacaagtatattcctcaagtcggtgatctcgtt
attggccgtatcgttgaagttcaagctaagcgttggaaagttgacatccactcctcctca
gatgctgtccttatgctctcctctatcaacttgcctggtggtgtacagagacgtaaattg
gaatcggatgagttgcaaatgcgcaatttcttcactgagggtgacttgtgcgtcgctgaa
gttcagtccttctttcatgatggaagcgtttcgttgcacacgcgtagtttgaaatacggt
aaactgcgtaatggaactctagctactgtcccgccaaatctcatgagacggctcaaatct
catttctacacactacctgtcaatgttgaccttattattggcttgaatggctctatctgg
gtgagcatgcacgacgacgtcagtcaggacctcaacctcaacgatgataatcagggtttc
gatagtgagggcgtgtataatgacaccaacgactctatcgactctcagactcgcgaatct
atcaatcgcactgctatcgttatagacatactcgctagccatagagttccccttactgac
acactcattgctactgcttatgatgtggctctcgatctagagcaagataatggtattagg
tttctctccagtaatgaggatgttcaggatgaattggtacactgcgcactccaagtcgag
gagagtgctatggataatgcataa
DBGET
integrated database retrieval system
