KEGG   Wallemia ichthyophaga: J056_000450
Entry
J056_000450       CDS       T03457                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
wic  Wallemia ichthyophaga
Pathway
wic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:wic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    J056_000450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:wic03041]
    J056_000450
Spliceosome [BR:wic03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    J056_000450
 Complex C
   U5 SnRNP specific factors
    J056_000450
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_HPS5 NBCH_WD40 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st PQQ_2 Beta-prop_NWD2_C Beta-prop_EIPR1 Ge1_WD40 WD40_RFWD3 Beta-prop_DCAF4 WDR54 Beta-prop_DCAF12 TibC_1st Beta-prop_Nup120_160 Mannosyl_trans4
Other DBs
NCBI-GeneID: 20373402
NCBI-ProteinID: XP_009268353
UniProt: R9AES8
LinkDB
Position
Unknown
AA seq 374 aa
MSKRGSDTQALTAKRVRSDEMEQQLGLDESHTHQVALSKKHDDDNALIRSVHRTSKLSAP
IIKLDGCHTGEITSVKFDMTGNTIVAASADKSVSLWRTYTDNANYGYIPHAHKDAITSLV
LSHTSPSDPLILTASADSTIGVWQASTGKLVRRLRGHSDVVNVLAVSRNNLLASAGDDNK
VFIWQLDGDDGNGDRTPPKHPVHTITWNAPVIALEWSDDDSTLYIGGLDNQIHAHNLSSH
STLFSLTGHTDTVTFLRHSPCSQHLISCSNDSSVRIWDVKPFTSDPTRQYRVLHGAVSSF
EGVYSQPAWSADGTRVAVGSADRTVTVWNVESGDILYKLPGHTGTVGAVDIHPTDPVIVS
GGKDCRMFLGELMS
NT seq 1125 nt   +upstreamnt  +downstreamnt
atgtctaaacgcggctcagatacacaggcactcacggctaagcgtgtcaggagcgatgaa
atggagcagcaactgggtttagacgagtcacacacccaccaagttgctctctccaagaag
cacgacgacgacaacgcgctgattagaagcgtacaccgcacatccaagctatcggcgcct
attataaagctcgatgggtgtcacaccggtgaaataacctcggttaaattcgacatgact
ggaaacacaatagtcgcagcttctgcagacaagtcagtcagcctatggaggacatacacg
gataatgcaaactacgggtacattccacatgcacacaaggatgctattacctctctagtc
ctctcacatacttcaccctccgatccactcatcctcaccgcctcagctgattccacgatt
ggtgtgtggcaggcttcgacgggaaagctggtgaggaggctgagagggcacagcgacgtc
gtcaacgtactcgccgtatccagaaacaacctccttgctagtgctggtgacgataacaaa
gtgtttatatggcaattagacggcgatgacggtaacggtgatagaacaccacctaaacac
cccgttcataccattacctggaacgctcccgttattgcgcttgaatggtcagacgatgat
tcgacgctgtacattggcgggttggataaccagatacatgctcacaacctctcctcccac
tccacactcttctcactcaccggtcacacagacacagtcaccttcctacgccactcacct
tgctcgcaacacctgatatcctgctcgaatgactcgtcagtgcgtatctgggacgttaag
cctttcacaagcgaccctaccagacaatatagagtgctgcacggtgctgtgtcctcgttc
gagggtgtgtactctcagccggcgtggagtgcagatggaacacgcgtagctgttggtagt
gctgaccgcactgtcactgtgtggaatgtagaatctggcgatatcctttataagctaccc
ggacacactggcaccgttggcgctgtcgatattcacccaaccgaccctgtcattgtctct
ggcgggaaggattgcaggatgtttctgggcgagttgatgagctga

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