Wallemia ichthyophaga: J056_000784
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Entry
J056_000784 CDS
T03457
Name
(RefSeq) Vacuolar protein sorting-associated protein 13
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
wic
Wallemia ichthyophaga
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
wic04131
]
J056_000784
Membrane trafficking [BR:
wic04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
J056_000784
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_VAB
VPS13_M
VPS13_C
Motif
Other DBs
NCBI-GeneID:
20373736
NCBI-ProteinID:
XP_009268687
UniProt:
R9AKJ1
LinkDB
All DBs
Position
Unknown
AA seq
3237 aa
AA seq
DB search
MLEGVVAGLLNRFLSAYIDNLDTSQLNVGIWSGDVKLKNLKLRKSALDKFRLPVDVKEGY
LGELTLSIPWSNLKGKPCKINIDNVYLIALPAGASQFDAEEDDKRSQQVKQERLDSAELL
LNSQASPGISPEDEKKNESFANSLVTKILNNLQLVIENIHIRYQDSISHHNQLFAVGLTL
SGFSAVSTDSNWLPTFIEENREGIHKLAKLESLSAYWDTDAESLLGHPTNIAIEKFTSLI
ANKQNTPNHQYILKPVSGEGRLRMNHQATSDTPKLDIELLFDRIGFMLNEEQYRDALLMV
DNFHFHIRQSQYIRLRPNADELHANKPRALLSFAARAILNEVHERNKKWTWAYFAERRDD
RKLYVALWKERKESERLQKGMESDRETKLRRLEEKLRYEDIRFYRSIARSELRKESLRQR
GADSVNPQTPQPTQQGWMGWAWNAASWAVGQDQNAVSTNDDKDNSATLNEQQRKELYDAI
EWDEKQAVSSAVDLPKDAMKLRVKAILNTGSLALRYPNTSGDLVSIVFSALTADVVKRVD
NLSVAVGLGDLSVKDATNPKTIYPNIVSVKRDSALEEDDKTQQFFSFAWESKPLDNRADS
ALQLKMRHLEIIYHKGYVEAIRNFFKPPESKLESINALIDVASESLDSFRKQTRTGFEYA
IAQHSTIDLRVDMNAPIIILPQDVTDNNTMHLVLDAGHIAVESDLADKKAIKDVRHKAHA
KSDYEESDWKQLEELMYDKFSLQLKRAQLLIGNDLNALLGVLERREKGGMDGKNRQRENY
NIVEEINLNLTVHNSILPSAVNLTRFRVAGHLPELTINISERKYQSMMAIIDVAIPHFDD
NNNNNANAHAHIPSKPTKKQTENENTHARRGSIFTSGGDLPTYDLDVHDDDGESVTGSLS
EAETVDRFFEAPESVASGVSDEVNYRQQVFTLDFRVDKLQANAFRSTYDSDGKEKEKLLA
EGILKGFYLGYVYRQLDMHVDVLLQSLSIVNVDTNCGTRTPLITSDDNSTQQKQHPTELV
RVRYDRVQPHSPEFHTVYHGIDQIVDTDLSTINLLARPEPIIELYAFIMETFVGGRGSGS
GKTDDALANANPHSSPEMVSSQLGSQLSSEDEEGGNRKIKVDFKLHSIVFKLDDGVTQLA
TLILSAGDVSILLDNTTMQVNAKLGGLEISDDNSAIDDGFRQLLSIEGEELADFSYQTFD
PKRESYPGYNSSVYLRTASLKFTFNEEPVNDLYKFLIKFARLKALYDAATRAAQDAANDV
NGGRMQYDVRVRAPIIVFPTLTNQSMLTMRLGEFVAKNSFTGKSPGDIQHLHTGLHGINL
TSTIRDTDKDADKDGFETLPILDNVNLDFNFDIFDQIVLEDGKTRHGMQKIHGHMTDVKV
ALTQTQYVSLYDLSKSIPKAFTLDEQHGAELGEEADQISIPRDARKVVHEEKEEKVMREV
RGQEEERERNGERKVAKKTSVDLNPEILLSEQDKEQDKWTSTELAFDVGTVSLELFTPLA
TSARKLEENSIARFSLNDTNLKLKTLSDGSMESELTLKSLRMDDTRAQSGSKFRQLIPPA
IHDGHQFMIHYSKAGGTDQSSLALLTIDSPKIIFSVDPLFALTDYFYSAIPAQSNDSGAQ
ETQESYEDPMDVDVDQLEDSPIKQPDEINSEPSFAYRLNVVNTSIIILANESEPTTEAIE
LSVKQVLMSQHGVIALKVDRLGMFLSRMDKPKDKLRFLDNFDFTLSYDSRKVDLRQNTSI
ELRADPIIFRASYRDILLITDIFNKALELSTKSRPTQVSPDELRGGENTSARSVKAPAIS
PGAKRYSGAESASAFGITPASQNHLALPAPSMKPKVMITKENLSAVFEGFQVVLIEDLHE
LPLIHLHTKRFNIDLFDWTSEMKIQTAVSWSINYFNPTNSHWEPLMDPWELTLRGERLQP
PTGMNIVMSSRRRLEINLTSSFIQTALLFYSLIGNNATRLLEKPRGSSAPFLLRNHTGYD
MNVWPTHDASNTLSLSNTSESPWRFEDLRTLREDVSASAHNSVGIQLDNTKWESVGRISV
DKEGEQTYILKSKISKVLHRVVVDIRLQDTFKVVTFRSTYQVENSSHLPIEIVIIGGNGK
PAGGVSKLTPGQSYALPIEAAYEKRIKIRPDPGFGYAWSSEAFYWQDVMKNPSRSISCKA
SDHAEPSFKFQACADFDPADELTRIYPRLTLRLRSPIEIENLLPYDIKFRIFDKNTKQDQ
SSFLLQGGVSPLHLIELSHLVLLSITIENSVFSPSEFAIINTDNPDDFPVESVLSLSDQE
SLKLNVRIHYYRYPKSGGAFKVQIYSPYVLYNKSGFDFVLRSKSLLGAGKNVAGQDLSSS
KMKKRETSPFMFSHNSDDRQKRFLLRIGDSNWSKPLSFDVAAADTEVTLSAQGDENVHIG
MSVVEGNGKYKLSKVVTIQPRFLIKSQLSETINARVDSSPYLLNLKASERKALHRLESLD
EDEKHLLKISYPGTKEWSAPFSLTDVGPVHLRMRLGDQVDHLIKADVCIEGPTIFVYLKK
DTDPWPFMVENNSDTGVEIWQSTTEGYDNLTMMPGLKPKRYNVAPHSSMDYAWDAPAETD
KKLRLRAQGGKERSIDLMEIGALPPYRFASDTLSIDVRADGPRQVLVLSPYSQDESLYQP
RRRSVAKSETSDSTAGQFEEKNLETVLNTQFSLELEGVGVSVLNRRMQELFYASFRGIGM
QYSDSNLHTSYNMSCKWIQIDNQLFGGLFPIILYPTTQPKDGRELERQPTLDSSVIISKD
YSHGVTRIEYFSMLLQSMTIEVDEDFLMALIDFSRFEEPSWDRDQQKEDCLIESPVEIIE
PADLGSGMQLYFQVFHLQPISLDLSFMRTDRVNVDNKTTSAHTRNPVMFFINALTMALGN
VSGAPIRLNSLILQNARFTSSLLSQHIMINYREQFMYQLYRVLGSADFLGNPVGLFNNVS
SGVADIFYEPYQGLVMHGNKELGIGIARGATSFVKKTVFGVTDSMSKVTGSIGKGLSAIT
LDQEYQSRRRMAQRRNKPKHALYGVAAGANAFAVSIASGFEGLALKPIEGAQRSGTGGFF
KGVGRGIVGAVTKPVIGVFDLASNVSEGIRNTTTVFDPQDIDRIRLPRFIADDGVLRAYS
ERESLGQSWLKNVENGKYFNETYVAHLNVRGSDAVLLLTTAHILEIQVRNLELRWEVAFD
ELHSISLENHGISLRLKGNVTGPFMNLTSQESRTWFFQRIQSVVNNYNYARSKPIER
NT seq
9714 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaaggtgtcgtcgctggcttactcaatagattcctctcagcgtacatcgataat
ctcgacacaagccaacttaacgttggcatttggagtggagatgtcaagctaaagaatctt
aaattgaggaaaagcgctttggataagtttaggttgcctgttgacgtcaaggagggttac
ctcggtgaactaacactcagtatcccgtggagtaaccttaaagggaaaccatgcaagatt
aacattgataatgtctacctcattgctctacctgcgggcgctagtcagtttgacgccgaa
gaagatgataaacgctctcaacaagttaagcaggaaaggcttgatagtgctgagttgttg
ttaaactcacaagcctcccctggtatctccccagaagacgagaagaagaacgagtcattc
gccaattcactagtcaccaagatcctcaacaatcttcaactcgttatcgaaaacatccat
atacgctatcaagatagtattagtcatcataatcagttattcgccgttggtctcaccctt
agcggctttagcgctgtttccacagattctaactggctacccaccttcatcgaagagaat
agagaaggcattcataagcttgctaagcttgaatccctttctgcttactgggatactgac
gctgaatccctcctcggtcacccaacaaacatcgccatcgagaaattcacttcccttatc
gccaacaaacaaaatactccaaatcatcaatacattctcaaacctgtttctggtgagggt
cgtctgcgtatgaaccaccaggccaccagcgacactcccaaacttgacattgaacttctc
tttgacaggattggttttatgctcaacgaggagcagtaccgtgatgctctcctcatggtt
gataacttccatttccacatccgtcaatctcaatatattcgcttgcgtccgaatgctgat
gagttgcatgccaacaaacctcgtgccctgctttcttttgctgcgagggccattctcaat
gaggtgcacgagcgcaataagaagtggacttgggcgtatttcgctgagcgccgcgacgac
agaaaactctatgttgccctatggaaggagcgcaaggagtctgaacgtctgcagaagggt
atggagagtgatagggagacgaagctgcggcggctcgaagagaaactgcgctacgaagat
atacgtttttatcgttctatagccaggtcagagctgcgcaaggagtctttgcgccaacgt
ggcgccgatagcgtcaacccccaaaccccacagcccacgcaacagggctggatggggtgg
gcttggaacgctgcttcgtgggctgttggtcaagatcagaacgcagtgtctacaaatgat
gacaaggataactctgccactctcaatgaacagcagagaaaggaactctacgacgctatc
gagtgggatgaaaaacaggcggtgagctccgcagttgatctacccaaagatgcaatgaaa
ttgcgcgtaaaagctattcttaataccggctcgctcgctctcagatacccaaacacgtct
ggcgatctcgttagcattgttttcagcgccctcactgcggatgtcgtcaagcgggttgat
aacctaagtgtggctgtcggtctaggtgatcttagcgtaaaggatgctactaatcctaaa
actatctaccctaacatcgtcagcgtcaagagggatagtgctttggaggaggatgataaa
acccagcaatttttctcgttcgcttgggaatctaaaccgctcgataacagagcagacagt
gcactacaattaaagatgagacatctcgaaattatctaccataaggggtacgtagaggct
atacgaaattttttcaaaccacctgaatccaaactggagtctatcaacgcgctcattgac
gtcgcttcagagtcgctagattctttcaggaagcaaacgcgaactggtttcgaatacgcc
atcgcacagcactccactatcgatctgcgtgtcgatatgaatgctcccatcatcatcctc
ccacaagacgtcaccgacaataacactatgcatcttgtcctcgatgctggtcatatcgcc
gtggagtctgacctcgctgataaaaaggcaattaaggatgttagacataaagctcacgct
aaatcagattatgaagagagcgactggaagcagctcgaggagcttatgtatgataaattc
tcacttcagttgaaacgcgctcagttgcttatcggtaatgatcttaatgcgcttctcggc
gtgctcgagaggagggagaaaggtgggatggatgggaagaacagacagagagagaattac
aatatcgtcgaggaaatcaatctcaacctcaccgtccataactccatcctgccttctgct
gttaacctaacacggttcagagtcgctggtcacctccccgagcttacaatcaatatatct
gagcgcaagtaccagtctatgatggctattattgacgtggctattcctcactttgacgat
aacaataacaataatgccaacgctcacgctcacattccatctaagccgacaaagaaacag
actgaaaatgaaaacacacatgctcgccgcggttcaatttttacaagcggtggtgaccta
cctacgtacgatctggacgtccatgacgatgacggggagagtgttacagggagtttgtca
gaagcggagacagtagacaggttcttcgaggcacctgaatcggtagcgtcgggtgtatca
gatgaagttaattatcgccagcaagtcttcacactcgatttcagagtggacaagttgcaa
gcgaatgctttcaggagcacgtacgactcggatggaaaggaaaaagaaaaactgctcgca
gagggtatcctcaagggtttctacctcgggtatgtatataggcaactcgatatgcatgtc
gacgttctgctgcagtccctctctattgttaatgttgacacgaattgcgggacacgtaca
ccgctaattacgtcagacgataattccacgcagcaaaaacagcatcccactgaacttgtc
agagttaggtacgatagagtgcagccgcattcaccggaattccatactgtttatcacggt
attgaccagatcgttgacactgatctttctactatcaaccttctcgcacgacctgaaccg
attatcgagctgtatgcgtttatcatggagacattcgttggcggacgtggcagtggaagt
ggcaagactgatgatgcacttgcaaatgccaatccacattcaagcccagagatggtgagt
agtcagttaggatcgcagttgtcgagtgaagatgaggagggaggtaaccggaagattaaa
gtggatttcaaactgcacagtatagtatttaagctagatgatggagtgacgcagctagcg
actctgatactctcagctggtgatgtatcaatcttgctcgacaacaccaccatgcaagtc
aacgcaaagttaggtgggctggagataagcgatgacaacagcgcgatagatgatggcttc
cgccagctcctctccatcgagggtgaggaattggccgacttttcttatcagacattcgat
ccgaagagggagagctaccccggttacaactcctccgtatatctgcgcacagcttcgctt
aagttcactttcaatgaggaaccagtcaacgatttgtacaagttcctcatcaagtttgcg
cgtttaaaagcgctctacgacgcagctacacgcgcagcgcaggacgcggctaacgatgtg
aatgggggccgcatgcagtacgatgtgcgcgtgcgtgcacctatcattgtcttccccact
ctcaccaatcagtctatgctgactatgcgactgggtgagttcgtcgcgaagaatagcttc
actgggaaatccccaggcgatatccagcatttgcacactggccttcatggtattaacctc
acctccaccatcagagacacagataaagatgcagacaaggacggttttgaaacccttccc
atccttgataatgtcaatctggatttcaatttcgatatattcgaccaaattgtactcgag
gatggcaaaacacgtcacggtatgcagaagattcacggccatatgactgacgtcaaggtg
gcgctcacacagacacagtatgtgtctttgtacgacctcagcaagagcatccctaaggcg
tttacactcgacgaacagcacggtgcggagctgggcgaggaggctgaccaaatcagtatt
ccccgcgatgcaaggaaggttgtgcacgaggagaaagaggagaaagtgatgcgtgaggtt
cgcggccaggaggaggagcgtgagcgcaatggtgagcgcaaggtagcgaagaagacatct
gtcgacctcaaccctgagatacttctcagcgagcaagacaaagagcaggataagtggacg
agcactgagctggcgtttgacgtcggaaccgtctccctcgagctcttcacccctcttgct
actagcgctagaaagttagaggagaacagcatcgcgaggttctcgctaaatgacactaac
ttaaaactgaagacgctttctgatggctccatggagtccgagctgacactcaaaagcctc
aggatggacgacacccgtgcgcagtcaggctccaagttcagacaactcattccccccgct
attcatgacggtcatcagtttatgatccattactctaaggctggcggcacagaccagtct
agtctcgcactacttactatcgactcaccgaaaattatcttctcagtcgatcccctattt
gctttgacggattacttctactcggctataccggctcagtcaaatgattcgggtgcccaa
gaaacgcaggagagttacgaggaccctatggatgttgatgtggatcaacttgaggactca
cctataaaacagcccgacgagattaacagcgaaccttcattcgcatataggttgaatgtc
gtcaacacatccatcattatactcgctaacgagagtgaacctacgacggaggctattgag
ctttctgtgaaacaagtgctcatgtcacaacacggagtgatcgcacttaaggtagacaga
cttggcatgttcttgtcgcgaatggacaaacccaaggacaagctgcgcttcctcgataac
tttgatttcacactgagctacgactcacgcaaggtcgatctgcgtcagaatacatccatc
gagctacgcgctgatcctatcatcttcagagcgtcttatagagatattttactcattaca
gatatcttcaataaggcgcttgagctgtcgactaaatcaagaccgacgcaggtgtctcca
gatgagttgagaggcggtgaaaatacttcggctcgctcagtcaaagcgccagcaatttca
ccaggcgcaaagaggtattcgggagcagagtctgcatcagcatttgggatcactccggcc
tcgcagaaccacctcgctctccctgctccatctatgaaaccaaaggttatgatcacaaag
gagaatctcagtgctgtgtttgagggattccaggttgttttgatcgaggatctccacgag
ctccccttaattcaccttcatactaagagatttaatatcgatctgttcgattggacctcc
gaaatgaagatccagacggctgtttcgtggtcgattaattacttcaatccgacaaactct
cactgggaaccgctaatggatccatgggaacttactctaaggggagaacgtcttcaaccg
ccaactggaatgaatattgtgatgtcttcacggaggagactcgagattaacttgacgtcg
tcgtttattcagactgccctgcttttctactcgttgattggaaataacgctaccaggcta
ctcgagaagccgcgcgggagctctgcgccgttccttctgcgcaaccacactggatacgat
atgaacgtgtggccaacgcacgatgctagcaataccttgtcgctgagcaacacatccgag
tcgccgtggagatttgaagatctgcgcacacttcgcgaggatgtcagtgcatccgctcac
aacagcgtaggtattcagctcgataacactaagtgggagagtgttggacgtatttctgtc
gataaggagggtgagcagacatacattctcaagtctaaaatcagcaaagtgttacacaga
gtagtcgtcgatattagattgcaggatactttcaaagttgttactttcagatcaacatac
caggtcgagaatagctctcacctccctatcgagattgttattattgggggtaatggtaaa
cctgcgggtggggtttcgaaactcaccccaggtcagtcttacgctttgcctatcgaagct
gcgtatgaaaagcgcatcaaaattagacctgatcctggattcggttatgcgtggagttct
gaagctttttactggcaagatgtcatgaaaaatccttcaagatctatcagctgtaaagct
agtgatcatgctgaaccatcattcaaatttcaggcttgtgctgatttcgaccccgctgat
gaacttactcgtatttaccctcgcttgacactcagattacgctctcctatcgagattgaa
aatctgttgccgtacgatatcaaattcagaatcttcgacaagaatactaaacaggatcaa
tcttcattcttgcttcagggcggtgttagccctcttcatcttattgaattgtctcacctc
gttctccttagcattaccatcgagaattcagtattttctccgagtgagttcgcaatcatc
aacacggacaaccccgacgatttccccgttgaaagtgtcctgagtttatcagatcaagaa
tcgttgaagctgaatgtgcgcatacactactatcgctatccgaaatcaggcggcgcgttc
aaggtacagatatactctccatacgttctttataacaagtctggattcgattttgtcctc
cgttccaagagtcttctgggcgctgggaagaatgtggctggccaagacctcagttcgtcc
aagatgaagaagagagagacgtcgccgttcatgttctcgcacaactcagacgatcgccaa
aagaggttcttgctcaggatcggcgactcgaactggtcgaagccgctgtcgtttgatgtg
gctgccgctgacacggaggtgacgctgtctgctcaaggcgacgagaacgtacatatcggt
atgagcgtagttgagggtaatggaaagtataagcttagcaaggtcgttactatccagcct
cggttccttatcaagagccagctgagcgagacgattaacgcgcgcgttgacagctctcca
taccttctcaatcttaaagctagtgaaaggaaggcgctgcacagattagagagtctggat
gaggatgaaaagcacctccttaagatctcctatcctggtacaaaggaatggtccgcacct
ttctctctcactgacgtcggtcctgttcacttaagaatgagactgggagatcaggtcgac
catctcatcaaggccgacgtgtgcattgagggtcctaccatctttgtctacctcaagaaa
gatactgatccatggccatttatggttgaaaacaatagcgatactggtgttgagatttgg
cagtctaccacggaaggttacgacaatctcactatgatgccgggtttgaaaccaaagcgg
tacaatgttgctcctcattcgtctatggactacgcttgggatgcacctgctgagactgac
aaaaaattgcgcttgagagctcaaggagggaaagagcgctcgatagacctcatggaaata
ggcgccttacctccttatcgatttgccagtgacacgttatcgatcgatgttcgtgctgat
ggacctcgtcaagtgttagtgctgtcgccatattcgcaagacgagtcgctctatcagccc
cggaggagaagtgttgcgaaatctgaaacgtcagattcgacagcagggcagttcgaggag
aaaaacctggagactgttctcaacactcaattcagtttggagctggagggtgtaggtgtt
agcgtcttaaataggcgtatgcaggaactgttttacgcatcatttaggggtattggaatg
caatactcggacagtaatcttcacacgtcttacaatatgagctgcaagtggattcaaatt
gacaatcagctgtttggtggactcttcccaattatcctttaccccacaacgcagccaaag
gatggtagagaactggagagacagccaacgctggacagctctgtcataatatctaaggac
tactcgcacggtgtgacgcgtatcgagtacttctccatgcttctgcaatcgatgactatt
gaagtagacgaagacttcttaatggctttgattgactttagtagatttgaagaaccttcg
tgggatcgcgatcagcagaaagaagattgtttgatagagagtcctgttgagataattgaa
cctgcagatttgggtagtggaatgcaattatatttccaagtgttccatttacagccaata
tcgcttgacttgtcattcatgcgcacagacagggtgaatgttgacaacaagacaacttct
gcccacacacgcaatccggtaatgttttttatcaacgctctcacaatggcattgggtaat
gttagtggtgcaccaattcgtctcaactcgctcattctccaaaatgctcggttcacatcc
tcgttgctatctcaacatattatgataaattacagggagcaattcatgtaccagctttat
cgcgtgctcggtagtgctgacttcctcggtaatcctgttggattgtttaacaatgttagc
tcgggtgttgcggatatcttttacgagccatatcaaggactcgtgatgcatgggaacaag
gagttaggtattgggattgcgagaggagcgacaagcttcgtgaagaagactgtattcgga
gtgacagactcaatgtctaaagtgactggatcaattggaaaaggtctatctgccataacg
ctcgatcaggagtatcagagcagaaggagaatggcgcaacgtcgcaataagccaaagcat
gcactttatggagtcgcagcgggtgcgaacgcgtttgcggtatcgattgcatctggattt
gaaggcttggcgttgaaaccaattgagggtgcgcaaagatcaggtactggaggtttcttc
aagggagttgggcgtggaatcgttggtgcggtcacgaagccagtgattggagtgtttgat
ttagcatcgaatgtttcagaagggattcgcaacacgacgacggtatttgacccacaggac
attgacaggattagattaccgaggttcattgcagatgatggtgtgttaagggcgtacagc
gagcgtgagtcactaggtcaatcgtggctgaagaatgtcgagaacgggaaatatttcaac
gaaacatacgtcgctcatctgaatgtgaggggtagtgatgcagttctactgctcaccaca
gcacatattttagagatacaggttcgtaatcttgagttgaggtgggaagtagcgttcgat
gaactccactcgattagcttggagaatcatgggattagtttgaggctcaaggggaatgtg
acgggaccttttatgaacctgacttcgcaagagagtcgcacgtggttcttccagcgtata
cagtctgttgttaacaactacaattacgcacgcagcaaaccgattgagcggtag
DBGET
integrated database retrieval system
