KEGG   Wallemia ichthyophaga: J056_001718
Entry
J056_001718       CDS       T03457                                 
Name
(RefSeq) Histone deacetylase RPD3
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
wic  Wallemia ichthyophaga
Pathway
wic03082  ATP-dependent chromatin remodeling
wic03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:wic00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    J056_001718
   03083 Polycomb repressive complex
    J056_001718
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:wic03036]
    J056_001718
Enzymes [BR:wic01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     J056_001718
Chromosome and associated proteins [BR:wic03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     J056_001718
   HDAC complexes
    Sin3A-HDAC complex
     J056_001718
    BRAF-HDAC complex
     J056_001718
    REST complex
     J056_001718
    SHIP complex
     J056_001718
    MiDAC complex
     J056_001718
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     J056_001718
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    J056_001718
  Chromatin remodeling factors
   NuRD complex
    J056_001718
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 20374670
NCBI-ProteinID: XP_009269621
UniProt: R9ABP4
LinkDB
Position
Unknown
AA seq 414 aa
MEIYRAKPATRKEMTQFHTDEYVDFLNRISPDNMDSYAKEQAKFNVGDDCPVFDGLFEYC
SISAGGSMEGAARLSRNKTDIAINWAGGLHHAKKAEASGFCYINDIVLGILELLRYHDRV
LYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDLKDIGLGKGRKYSLNVPLRD
GITDSNYQSIFEPVIEHVMSWYKPSAVVLQSGSDSLSGDKLGCFNLSMRGHANCVSFVKK
FNLPLLLLGGGGYTIRNVSRAWAYETGIAVGQELSPHLPITEYHDYFAPSHTLDVPASNM
EDLNTKQYLFNLKAAIFENLRDIDFTPSVQLQPVPRMLHDDDDDHVLEDRDDPNSRRPQR
LWDRNVQRDDEFSDSDGEGEGENASGIRGVRAKLNGDSNARRNEQSYASTQPVI
NT seq 1245 nt   +upstreamnt  +downstreamnt
atggaaatctaccgcgctaaacctgcgacgcgtaaggaaatgactcagttccacacggat
gagtatgtagacttcttgaatagaatttcaccggacaatatggattcctatgccaaagag
caagccaagttcaacgtaggcgatgattgccctgttttcgatggtctgttcgagtattgc
tccatttctgcaggtggttcaatggagggtgccgctcgactcagccgcaacaagacagat
attgccattaactgggctggtggtctccatcacgctaagaaagctgaagcttccggtttc
tgctacatcaacgacattgttctcgggatcctcgaactcctccgctaccacgaccgcgtc
ctctacatcgatatcgacatccatcacggcgatggagtcgaagaggcattctacaccact
gaccgtgtcatgacggtatccttccacaaattcggtgaatattttccaggtacgggcgac
ctcaaagatataggtttggggaagggaaggaaatattccttgaacgtgcctttgcgagac
gggataacggatagcaactaccagtcgatattcgagccagtaatcgaacacgtcatgtcg
tggtacaagccgagtgccgtggtgctccaaagcggctccgacagcttaagcggggacaag
ctgggctgtttcaacttgagcatgcgcgggcacgccaactgcgtgtcgtttgtgaagaaa
tttaacctccccctcctcctactcggcgggggcgggtacacgatccgcaacgtcagtcgc
gcgtgggcgtacgagacgggtattgccgtcgggcaggaactcagccctcatctaccaatc
actgagtaccacgactacttcgccccttcacatacactcgacgtacccgcttccaacatg
gaagacctcaatactaagcagtacttgtttaatttgaaagcagccattttcgagaacctc
cgcgatatagactttactcctagcgttcaactccagcccgtaccacgtatgcttcatgac
gacgacgacgatcatgtccttgaagaccgcgatgaccccaactctagacgcccgcagaga
ttgtgggatagaaacgtgcagagggacgacgagtttagcgacagcgacggcgagggtgag
ggtgagaatgcgagcggtattcgtggtgtgcgtgccaaacttaacggcgattctaacgcc
agacggaatgaacagagctatgcgagtacacagccggttatatga

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