Wallemia ichthyophaga: J056_002202
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Entry
J056_002202 CDS
T03457
Name
(RefSeq) DNA mismatch repair protein msh-2
KO
K08735
DNA mismatch repair protein MSH2
Organism
wic
Wallemia ichthyophaga
Pathway
wic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
J056_002202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wic03400
]
J056_002202
DNA repair and recombination proteins [BR:
wic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
J056_002202
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Mre11_DNA_bind
LETM1_RBD
Motif
Other DBs
NCBI-GeneID:
20375154
NCBI-ProteinID:
XP_009266341
UniProt:
R9APH5
LinkDB
All DBs
Position
Unknown
AA seq
926 aa
AA seq
DB search
MMYSEDKKDKDIDSSANDGFAVFYKSMPNKLEGTIRLFDRGEFYSAYGDDANYVANTVFK
TQKVLKQLSSKKLKQPLPFLSLNRISAQTFLREALTTRQLKIEIWESEGGKKAQSYTLIK
TASPGNLQPVEDLLFASSDILTAPISMAIKLSVKEGLLHVGSAYCDASCRELGLSEFVDN
DLFSNVESLIIQLGVKECLLPSNDKGNDHDLTKLKTLVERCGIVVTEVKPSDFNMKDIEQ
DLDRLLKSGAVKQSSEFDMKIAMSSASVLINYLGLMGDAANFSQFTLKNHDLSHYMKLDA
SALRALSLFPSPGDVGGSKNMSLFGLLNHCKTAQGQRLLAQWLKQPLMTLHDIHSRQNLV
EWFTIETELRGIMREQIMNKMPDLHRLSKRFQRGVANLEDVVRTYQACLNIPKLLQDIKA
AEEGVEDDAIRLLIEETYVKPLQDLAGSLNMLIEMVESTIDLDELANHNYIIKPDFDDDL
KAYRIKLESIRDGLDEEHQAVGSDLGLELGKKLHMERHQTYGYCFRVTKAEAKSVANNKA
YHELSTLKNGTYFRTSTLRDLGDEYKEVQTAYDKKQSSLVKEVVGIAATYCPVLESLDNV
LAHLDVLMNFAFVADNSASPLVKPEVREKGTSDMLLTEARHPCLEVQDGVDFIANDVMLK
RDESEFLIVTGPNMGGKSTYIRQIGIIALMAQIGCYVPCTKATVPIFDCILARVGAGDSQ
IKGISTFMAEMLETATILKSATKNSLIIVDELGRGTSTYDGFGLAWAISEYIAVELRSFC
VFASHFHELTSLSNQQGHVKNLHVVAHVQHDQDEEDVSLLYKVEPGVSDKSFGINVAQMA
GFPDSVIKLAKRKADELEDIEGSEEKRQKFSDEDINSGVGVVKEFMHTFATSAQHSDEYD
ALMTTYNNYKDRIESSRWAQYVIDSL
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgatgtactctgaagataagaaagataaggatattgatagcagcgcaaatgatggattc
gcagtgttttataaatcgatgcctaataaactcgaaggcacaatacgcttattcgataga
ggagaattctattcagcttatggcgacgatgctaattacgtagccaatacagtcttcaag
acacagaaagtactcaaacaactttcctcaaagaagctcaaacagccactgccgttcctc
tcgttaaacagaatatctgctcagacttttctccgtgaagctctcaccacgcgtcagctt
aaaatcgagatatgggaatcagagggcggcaagaaggcgcagtcatacaccctaataaag
actgcttctccaggcaatctacaaccagtagaagatctccttttcgcttcatcagatata
ctcacagctcccatctcaatggctatcaagctcagcgtgaaagagggcctgttgcacgtc
ggttccgcttactgtgacgcaagctgccgcgaactcgggctaagtgagtttgtagataac
gacctcttctcgaacgtcgagtctctcatcatacaacttggcgtgaaggagtgtcttcta
ccgtccaacgacaagggcaacgatcacgatctcactaaactcaagactcttgttgaaaga
tgcgggatagtcgttacagaggtgaagccatcagacttcaacatgaaagacatagaacag
gatcttgacagactgttgaaaagcggtgcagtgaagcaatcctccgaatttgatatgaag
atagccatgtcttctgcatctgtcctaatcaattacctcggtttgatgggcgatgctgct
aacttttcccaattcactttaaaaaaccacgatttgtcgcattacatgaagttagatgcc
tcagcattacgcgcactcagtcttttcccctcgcctggtgacgtcggtggatcgaagaac
atgtctttgttcgggcttctcaaccactgcaaaacggctcaagggcagcgactgctagca
cagtggctgaaacagcctctaatgacattacatgacatacactctcgacaaaatctcgtc
gaatggttcaccatagagacggaactaaggggaattatgcgcgagcaaataatgaacaag
atgccagaccttcatcgactctccaagcgttttcagaggggtgtcgctaatcttgaagat
gtagtgagaacgtatcaagcctgtctcaatataccaaagttgctgcaagacatcaaggca
gcggaggagggtgtggaggatgatgcgattagactgctaattgaggaaacatacgttaag
cctctacaagatctggctggcagtcttaacatgctgatcgaaatggtcgaatctacaatc
gatctcgatgaattggctaaccacaactacatcattaagcccgatttcgatgacgatctc
aaggcttaccgcatcaagctcgagtctatccgcgatggcttagacgaagaacaccaggct
gtcggcagcgatctcggcttagagctgggcaagaagctgcatatggaaagacatcaaaca
tacggctactgcttcagagtgacaaaggcggaggcgaagagcgtggcaaacaacaaagct
taccatgagctgtccacacttaagaatggaacatacttcagaacatcgacactgagagat
ttaggtgatgagtacaaagaagtgcagacagcgtacgataagaaacaatcaagtttagtg
aaagaggtcgttggtattgctgctacatactgtccagtgcttgagagtcttgataatgta
ctcgcccacctggacgtgctgatgaacttcgctttcgttgcagacaactcagctagcccc
ttagtgaagccggaagttcgggagaagggcacgagcgacatgctgctcactgaagcacgc
catccttgtctcgaagtgcaggatggagtggactttatagcgaacgacgtaatgttaaag
agggacgaaagtgaattcctgattgtcacaggtccgaacatgggtggaaaatccacatac
atcagacagataggtataatagctttaatggcacaaatcggctgctatgttccatgtaca
aaggctacagtacccatattcgactgcatactcgctagagtcggtgcgggagattcccaa
atcaaaggcatatccaccttcatggctgaaatgctagagacagccacgatattaaagtca
gcaacgaaaaacagcttaatcatagtagacgagctaggtagaggtacatccacatatgac
ggtttcggtctagcctgggccatttctgagtatatagcagtcgagttgcgttcattttgc
gtctttgcgtcccattttcacgaattgacgagcttgtcaaatcaacaaggacacgtgaag
aatttgcatgtcgtcgcgcatgttcagcacgatcaagatgaggaggatgttagtctgctg
tataaagtagagcccggtgtcagtgacaagagttttggtatcaacgtcgcacaaatggct
ggctttcctgacagcgttatcaaactcgctaaacgcaaggctgatgagctggaagatatc
gaaggcagcgaagagaagagacagaagttttccgatgaagatatcaatagtggagtgggt
gtggtaaaggagttcatgcacacatttgctacatctgctcagcactcagacgaatacgac
gctctgatgactacctataacaattacaaagaccgaattgaaagctcacgctgggcacaa
tatgtgatcgattctctgtaa
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