KEGG   Wallemia ichthyophaga: J056_002260
Entry
J056_002260       CDS       T03457                                 
Name
(RefSeq) Transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
wic  Wallemia ichthyophaga
Pathway
wic03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:wic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    J056_002260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:wic03021]
    J056_002260
   03036 Chromosome and associated proteins [BR:wic03036]
    J056_002260
Transcription machinery [BR:wic03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     J056_002260
   Coactivators
    SAGA/TFTC/STAGA complex
     J056_002260
Chromosome and associated proteins [BR:wic03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     J056_002260
    STAGA complex
     J056_002260
    TFTC complex
     J056_002260
    SAGA complex
     J056_002260
    SLIK complex
     J056_002260
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 TFIID_NTD2 Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_SPT8 WD_LRWD1 Beta-prop_WDR75_2nd Beta-prop_HPS5 Nucleoporin_N LisH Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 20375212
NCBI-ProteinID: XP_009266399
UniProt: R9APP1
LinkDB
Position
Unknown
AA seq 1337 aa
MTDFVQHDPYFREWHKRNNTHASLISPAAAAGGIIDASSAQASIDDDEDNNHASDNVSID
KADAPPPQGVAPDAKKVYDQEPVPQAEREDVERAIKKDTDNKDQSDASDVKSGLAAGSAA
AIAGAAGVAVAAASTDENPEPTPQHSDPHPPTAAQVDAPTILHAPKDTKVVTEVTKDESK
MNTNEPVTTEAPAPTGTAEDTVVPETKEEPVTAAQPQPTNTTESTIVPEPVEKDEQKQKQ
EQPKEKLNAFEETPVTTPKEESPAPIAAPAPSVPSKANHPALPKGVVNLKADGPRKPEGI
STPAGEHVPIYPGDTPDTPDISGKPNPVTVTVPLETVQLTDAEGTHIPVTEEGGDTTAVE
NAKDPKPEPISKDKVDAPIESKQKLPEEAHNAATWTTLPGPEEVPTPLRLSQRSPETPLA
PSLEESPHSAEEQKKQKKTEEEKKRSDKAEEEAKAKEAQESGENKIVPPKTPEKAKFQQD
QNSHLETPNAGQSTAPSMSPGNSSIKSATNLPGGYQQSPEKAGKEEEGEGQQSSSIMKSC
LIKKSENHHDIVLEYLRRKGFSGAEEALKSDLTSKGINAGTNNHTQTLEELARQSADSIK
NHNQDDNIPPGPSKDSVLLDLVKLASNDHLGKVTTDRLLLTDPTERERGFRDLDRWVEGS
LDVYRPQLRPILFPIFVHTYLDLISLSFQKSARAMLHRHAHSLIPYHADVIAHLGSLTLP
AHVKSDPLAIRWRSQKYIVRLGKAAWNLLLGWLSDALVGGPGGSSTGGTAEAKGRSLMLK
IVNERLRVDVVESSTKISQEMIEESTGLISDLTITYPTIPGQRMAIAQSAQSFNNIIGEL
KLGLPPLDDGLRAEVDRQVAVNDAMEREEGMEIDPQQQKPQQPPPQQEQPQQQPQSQQPS
DQGAQSAEATPTPNPPNAYAPGAAPAGTPQDATAPPPPAAGEIRDENHLLAPTRADLPPL
PVFRTADVRREVEKVFDSRKRINLGVELEKSTNGVEETIKSKVNLPSICAFTLQDVGDEL
NCSTFSPDSSILAAGLSDSTVRLWNLRNESFTGLRDDFDREHPPSSMKKLKLDTGLKDIK
FVGHSGPVFGLSFDPSFGTPVQPRHLISSSADSTVRLWSLETYSNLAVYRGHRDPVWDCE
WGPFGIYFATASRDRTARLWSAERPNALRIFAGHLGDVETVKFHPNSLYLATGSQDRTAR
LWDVQRGACVRIFIGHQAPLSTMALSPDGKYLATASDDLSISLWDLGSGKRIKKMLGHTA
QINSLNFDANSNLLISSSSDCSIRCWDILTSNTERPDNSTSDLLETFHSKNSPAYHVKFT
PRNLCLAALDGGNIAAD
NT seq 4014 nt   +upstreamnt  +downstreamnt
atgacggatttcgtacagcacgacccatatttcagagaatggcacaaacgtaataatacg
cacgcatctctcatctcccctgctgctgctgcaggcggtatcatcgacgcttcttccgct
caagcctcgatcgacgatgatgaggataacaaccacgcttcagacaacgtctccatcgat
aaggctgacgcccctcctcctcaaggtgtggctccagatgctaagaaagtttacgaccag
gagcctgtccctcaagcagagcgtgaggatgtcgagagggccataaaaaaagatacagac
aacaaagaccaatcagatgcctctgacgtcaaatctggtcttgctgctggaagtgctgcc
gctattgcaggtgctgcaggcgtcgcagttgctgctgcgtctaccgacgaaaacccagag
ccaaccccacaacactcagatccacacccgccaactgctgctcaagtagacgctccaact
atcttgcacgctccaaaggataccaaggtcgtcactgaagttactaaagacgagagcaag
atgaacacaaacgagcctgtgaccactgaagctcctgcccctactggtacagctgaggac
actgtcgttcctgagacgaaagaggagcctgtgactgcagctcaacctcaaccaacaaac
actacagaatctacaattgttccagagcctgttgagaaagacgaacagaagcagaagcag
gagcaaccaaaagaaaagctgaatgctttcgaggaaactccagtaacaacgcctaaagaa
gagtcaccagctccaattgcagctccagctccctccgttccatctaaagctaatcatcca
gctcttccaaagggtgtcgtcaatctcaaggcagacggacctcgcaaaccagaaggaatc
tcaacaccggcaggagaacatgtgccaatctaccctggtgatacaccagatacaccagat
attagtggaaagccaaacccagttactgtaacagtaccattggagacggtgcaattgaca
gatgcagaaggaacacatataccggtcacagaggaaggtggagatacgacagctgttgag
aatgctaaggatccaaagccagagcctatatctaaggataaggtggatgcaccaattgaa
tcaaagcagaagttgccagaagaggcccacaatgcagcaacatggacaaccttgcctgga
ccagaggaggttccaacgccactccgtctttcacaacgtagtccagaaacgcctttagca
ccctcacttgaggaatcaccacattcagcagaggagcagaagaagcagaagaaaacagag
gaggagaagaagagatcagacaaggcggaggaagaagctaaagcaaaagaagctcaagag
tcaggtgaaaacaaaatagtaccaccaaaaacaccagagaaggctaaattccaacaagac
caaaacagccatttggagacaccaaatgcgggtcaaagtacagcgccttcaatgagtcca
ggaaatagctcaatcaagtcagcaacgaatcttccaggtggatatcagcaaagcccagag
aaagcaggtaaagaggaagagggagaaggacaacaatcttcatcgataatgaagagttgt
ttgataaagaaatctgagaatcaccacgatatcgttcttgaatatcttcggcggaaggga
tttagtggcgcagaagaggcactcaagagtgatttgaccagtaaagggataaatgcaggc
acaaacaaccacacacaaacgctggaagagttggcacgtcaatctgcagactcaataaag
aatcataaccaagatgataatattccacctggtccttcaaaggatagcgtgttgttggat
ttagtgaaattggcttcaaacgatcacctcggtaaagtaaccacggatagactgcttctg
actgatccaaccgagcgtgaaagaggctttagagacttggatcgatgggttgaaggtagc
ctagacgtctacagacctcaattacgcccaattctcttcccaattttcgtacacacttat
ttagatctcatcagcctttcgttccagaaatctgctagagctatgcttcacagacacgct
cacagtctaatcccataccacgcagacgttatagcccatcttggcagtctgaccctccca
gctcacgtgaagtctgatccattggctatcagatggagatcacaaaagtatatcgtcaga
ctgggtaaagctgcatggaatctgttgttgggttggctatccgacgctttagttggtggc
ccaggtggttcttctacaggtggtaccgctgaagctaaaggtagatcactcatgttgaaa
attgtcaatgaaagactaagagttgatgtcgtcgaatcctctacaaagattagtcaagaa
atgatagaagaatcaacaggtctgatctctgatctcacaatcacttatcctaccatacca
ggccaaagaatggcaattgcacaatccgctcaaagtttcaataacattatcggtgaattg
aagctaggcttaccaccactagacgatggtttgagggcggaagttgacagacaggtagca
gttaatgacgccatggaaagagaggagggcatggaaatagatcctcaacaacagaaacca
caacaaccaccaccacaacaagaacaacctcaacaacaaccacaatcccagcaaccttct
gatcaaggtgcacaatctgcagaagcaacccctacaccaaatccaccaaatgcatacgca
ccaggcgctgctcctgccggtacacctcaagatgcaacagctccgccaccaccagcagca
ggggaaattagagacgaaaatcacttgctcgcaccaacaagagctgatctcccacctctg
ccggtattcagaactgcagatgtaaggagggaagtggaaaaagtctttgacagcagaaag
agaataaatttgggtgtcgagttggagaaatcaactaatggtgttgaagaaactataaag
agtaaagtaaatttgccttcaatctgtgctttcacgctacaagacgttggtgatgagctg
aattgctcaaccttttccccagactcatcaattttagctgcaggtttatctgattcaaca
gtcagactgtggaatcttcgaaatgaatcatttactggattgagagatgatttcgataga
gagcatccaccttcatctatgaaaaaactcaaattagataccggtttgaaggacatcaag
tttgttggacattctggaccagtttttggtttgtctttcgatccttcatttggcactcct
gttcagccaagacacctcatctcaagctctgctgactccactgtcagactgtggtcgttg
gaaacctactcaaatcttgctgtctacagaggacacagagatcctgtgtgggattgtgaa
tggggtccattcggtatctattttgcaacggcttccagagacagaacagcaagattgtgg
tcagctgagagacctaatgctctgcgtatctttgctggtcatttgggtgacgttgaaaca
gtcaaattccaccctaattcgctctaccttgctactggttcacaagacagaactgctcgt
ttgtgggatgttcaacgtggtgcttgtgttaggatattcattggtcatcaagctcctctc
tcaactatggctctcagtccagatggcaagtacttggctactgcatctgatgatctctcc
atatctctctgggatttaggaagtggaaaacgtataaaaaagatgctgggtcatactgct
caaatcaacagtctcaattttgacgcaaattcaaacctcctgatcagttcttcatcagat
tgctcgataagatgctgggatattctcacatcaaacactgaaagacctgataatagtact
tctgatctacttgaaacattccactcaaaaaacagtccagcttatcatgtcaaatttaca
ccacgtaacttatgtttagctgcattagatggtggaaatattgcagccgattaa

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