Wallemia ichthyophaga: J056_002361
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Entry
J056_002361 CDS
T03457
Name
(RefSeq) Pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
wic
Wallemia ichthyophaga
Pathway
wic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
J056_002361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wic03019
]
J056_002361
03041 Spliceosome [BR:
wic03041
]
J056_002361
Messenger RNA biogenesis [BR:
wic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
J056_002361
Spliceosome [BR:
wic03041
]
Complex B
Other components
Prp19-related factors
J056_002361
Complex C
J056_002361
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
Mad3_BUB1_I
TPR_8
ARM_TT21
Mad3_BUB1_I_2
CTE_SPB4
NRDE-2
Motif
Other DBs
NCBI-GeneID:
20375313
NCBI-ProteinID:
XP_009269901
UniProt:
R9AAM5
LinkDB
All DBs
Position
Unknown
AA seq
970 aa
AA seq
DB search
MSAEELKGIFPLTKPLPLPSNNTPLSKIVDLQFEEELSKNPTNLRVWFSYIDVVNSKLEL
LTPIEEDDSISTSTKELLGPLATPDRRTIYQTLTSIYERALGVFPFNYRLWYAYLLMRLS
FLTENITHDDINQLRNNRRRLVRGQPLIDLEKGDERIPWKEVSEANYLDGLIGESEWKAT
AAVFERCLSWLQSMPRIWLLYLSLLSNPACPPRLGRTHARRTFDRALRTLPPSLHMRIWP
AYLNWAKSMGGHCLTIIWRRYLAVDPYPIETYIQLLLNGEKPSSRALEACKLLLKLSRLS
RENHYVSPQGKSPYMLLNDWLEVCSEYADIVGVDVEKATALKPVQVGGRHNEMDKITESI
SKQPEDEKPAGIDSNVDADIDPSNDQKLDVDYLVRKDGLSIYKDQAGRLWTGLATYWIRR
GEFEKARQVFETAIKSVVTVRDFTQVFDAYAEFNEQLVTSLMDALADIDDDEKNDLEEDL
DSNMQSFEHLMDRRPILVNDVMLRRNPNDVNEWQKRIALFDNDDEKIVNTYTDAILTIKP
KQAVGFGDLYANFAKYYESKGDIGSSRQIFEKAIDVNYRRIDELAEIWIQWSEMELRHDN
FNEAVKVMERATTTPKNTKVDYYDESLSPQRRLFKSLKMWSFYVDIMESIGSVESTKAVY
DKILDLKIANAQIIINYALFLEENDYFDDSFKVYERGVDAFTYPVAFELWNVYLSKFLKR
YGGSKLELARDLFEQAVEGIPSKFAKPIFLMFGKLEEEYGLARRAIRVYERATQAVSDKD
KFEMYKILIAKVAMNFGLAATRPVYEKSLEELPDKSAIVMGLRFANLERKLGEIDRARSI
YAHTSQFCDTRIQKEFWNEWNQFEIDHGSEDTFREFLRIRRSVQASFNTEAHYLAAQSLH
NNASKSGEDGGEEEATAINDPMANVERNIPGFVKGKTQEKDGTGEEGDSEGVEGGGTNNE
DEIAIDEEDM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggaagaactaaagggaatattcccactcacaaagccattgcctttaccgtct
aataatacacctctttctaaaatcgttgatctccaattcgaagaagagttatcgaaaaat
cccaccaatctgcgtgtctggttcagctacatcgacgtcgtgaactccaagcttgaatta
ttgaccccaattgaagaggatgacagtatatccacgtctaccaaggagttactgggaccg
ctcgcaacgccagatagacgcaccatttatcagactcttacaagtatttacgagagagct
ctcggcgtatttccatttaattatcggctgtggtatgcctacctgctcatgaggttgtca
tttttaactgaaaacatcacccacgacgatatcaaccagctgaggaacaacagaagacgc
ttagtaagagggcagccgttgatcgatttggagaaaggtgacgagaggatcccttggaag
gaggtgtctgaggctaactacttggatggattgatcggcgagtctgagtggaaggccact
gctgccgtttttgaaagatgcctatcatggctacagagcatgccacgtatatggttgttg
tatttatcactactcagcaatccggcctgcccaccccgtttagggcgcacacatgctagg
cgtacgttcgatagagcgctgcgcacccttcccccttcgctacatatgcgtatttggcca
gcctatctcaattgggccaagtcgatgggtggacattgtctgaccatcatttggagaagg
tatttggcagttgatccatacccaatcgagacctacattcaacttttactaaatggcgag
aagccttcgagtagggccctcgaggcttgtaagcttctgctcaaactttcaagattgtca
agagagaatcactatgtgtctcctcaaggtaaaagtccctacatgttacttaatgattgg
ttggaggtttgctccgagtacgctgacattgtcggcgttgatgtcgaaaaggcgactgcg
ttgaaaccggtacaagtcgggggacgacacaatgaaatggataaaattacagaaagcatt
tcaaaacaacccgaagacgagaagccggctggtattgattcaaatgttgatgctgatatt
gacccttcaaatgatcagaaattagatgttgattatttggtacgcaaagatggtttgtca
atatacaaagaccaagctggtagattgtggactggattggccacatactggatccgtcgt
ggagagttcgaaaaagctcgtcaagtgttcgaaacggcgattaagtcagtggtcacagtc
agagatttcacgcaagtgtttgatgcttatgcggagttcaatgagcaattagtaacatct
ttaatggacgccttagcagatatagatgatgatgaaaaaaatgatctggaggaagacctg
gatagtaatatgcaatcattcgagcatttaatggacaggcgaccaattttagtaaacgat
gtaatgttacgtcgtaatccgaacgatgtcaacgagtggcagaagcgcattgcattgttc
gacaatgacgacgaaaagattgttaatacatacacagatgctatactcaccataaaaccc
aaacaagcagtcggatttggagatctttatgcaaacttcgcaaagtattacgaatccaaa
ggagatataggtagttcccgtcaaatctttgaaaaggcaattgatgtaaattaccgccgt
atcgacgagctcgcagaaatctggattcaatggtcagagatggaattgcgacatgataac
tttaacgaagcggtgaaggtgatggaaagagcaacgactacaccaaaaaacacaaaggtg
gactattatgatgagagtttgtctccacagaggcgattattcaaatcgttgaaaatgtgg
tcattctatgtcgatattatggagagtattggaagtgttgaatctaccaaagcagtttat
gataagattttggatctaaaaatagccaatgcacagataatcatcaactatgctttgttt
ttggaggaaaacgattacttcgatgacagtttcaaggtctatgaacgcggtgtggacgca
ttcacttaccctgtcgcatttgagctttggaacgtatacttgtcaaagttcttgaagcgt
tatggaggatctaagctggaactggcgcgtgacttgttcgaacaagctgttgagggaata
ccaagcaaattcgccaaaccaatatttctgatgtttggtaaattagaagaggaatatgga
cttgcaaggagagccattagagtttatgaacgtgctacacaagcggtctcggataaagac
aagtttgagatgtacaagatattgattgcaaaagtagctatgaattttggtctcgcagct
acgcgacctgtctacgaaaagagtttagaagagttaccggataagtctgcgatagtaatg
ggcttacgcttcgcaaatcttgaaaggaagctcggagagattgacagagcgagatcaatt
tacgcgcatacttcgcagttttgtgatacaagaattcaaaaggagttctggaatgagtgg
aaccaattcgaaattgatcacggtagcgaggatacattcagagagttcttacgtattcgt
agatcggtacaggcgtcatttaacacagaggcacattatttggcagcgcaatcgctgcac
aacaacgcgagcaagtcgggcgaagatggtggggaagaagaggcgactgctattaatgac
ccaatggcaaacgttgagagaaatataccaggattcgtcaaagggaaaacacaggagaag
gacggtacaggcgaggaaggggatagtgaaggagttgagggaggaggaactaataatgaa
gatgagatagcaatcgatgaagaggatatgtag
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integrated database retrieval system
