Wallemia ichthyophaga: J056_002442
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Entry
J056_002442 CDS
T03457
Name
(RefSeq) Polyadenylate-binding protein, cytoplasmic and nuclear
KO
K13126
polyadenylate-binding protein
Organism
wic
Wallemia ichthyophaga
Pathway
wic03015
mRNA surveillance pathway
wic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
J056_002442
09123 Folding, sorting and degradation
03018 RNA degradation
J056_002442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wic03019
]
J056_002442
03041 Spliceosome [BR:
wic03041
]
J056_002442
Messenger RNA biogenesis [BR:
wic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
J056_002442
mRNA cycle factors
Stress granule specific factors
J056_002442
Spliceosome [BR:
wic03041
]
Complex C
Other components
Complex C specific factors
J056_002442
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
Nup35_RRM
RRM_occluded
PNPase
Motif
Other DBs
NCBI-GeneID:
20375394
NCBI-ProteinID:
XP_009269982
UniProt:
R9AAA6
LinkDB
All DBs
Position
Unknown
AA seq
652 aa
AA seq
DB search
MSQAQVPSEVQSDVQAQAAPAPAPAPAPAPQSADQSNNGPPQSASLYVGELDPTVTEAML
FEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERALEQLNYSLIKNRACRIMWS
QRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDENGNSRGYGFVHYE
NGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQQKIDEQKSQFTNVFIKNLDVSVDDEK
FKQITEPFGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVDSLNQVEVEGKRIFAARA
QKKTEREEELRRNYEQAKLEKMAKYAGVNLYVKNLDDDFDDERLVGEFEPFGTITSAKIM
KDEKGASKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLAQRRDVRRQQLESQIAQR
NQLRLQHQAAAGVPISGFMPGAPMYYQPPPGAYPGGRSMYGQPGFAPPRPRGYPAGQQVP
GMPIPSPYGPPPQGYMPTNYRPARPARTNGAQVQGGSPAPNVRPAVPAGGPGPGPRPAGV
PVRPAQGGKPAKQEGGGQISASVLANAPPAEQKQMLGEALYPKIFNVQPELAGKITGMLL
EMENSELLFLLENEDAMKSKVDEAIAVLNEYQDEDAAEGAGTGAGAEPTSTA
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagcccaagtcccatctgaagtacaaagtgatgtacaagcccaagctgctcca
gcgccagctccagcaccggcaccagctccacaatctgctgatcaatcgaacaacggtcct
cctcagtctgcttcattatacgtcggcgaattagatccaaccgtcactgaggcaatgctc
ttcgaaatcttcaacatgattggtccagttgccagcatccgtgtttgcagagacgctgtt
actagacgctccctcggttacgcttacgtcaactacctcaacctccaagacggagagcgc
gcacttgaacagctcaactactctcttatcaagaacagagcttgtcgcatcatgtggtct
caacgtgatcctgcccttcgtaaaactggccaaggcaacatcttcattaaaaaccttgat
gaggctattgacaacaaggctcttcatgacactttcgccgcctttggtaacgttctctct
tgcaaggttgctaccgatgagaatggcaactctcgtggttacggttttgttcactacgag
aacggtgaatctgcgtctgctgctattcaacacgtcaacggtatgcttcttaatgacaag
aaggtctacgttggtcaccacgtctcaaagaaggaacgtcaacaaaagattgatgaacaa
aagtctcaattcaccaacgtctttattaaaaaccttgatgtctctgttgatgatgaaaag
ttcaagcaaatcactgaaccattcggtgaaattctttcagcagtagttcaaaaggatgag
caaggtaactcacgtggtttcggtttcgtaaactacaagaaccacgaagaggctgcaaag
gctgtcgattcgctcaaccaagttgaagttgaaggaaagagaatctttgctgctcgtgct
caaaagaagactgaacgtgaagaagaacttcgtagaaactacgaacaagccaagttagaa
aagatggctaaatacgcaggagtaaacttatacgttaagaacttggatgatgactttgat
gatgaaagattagttggagaatttgaaccatttggtactatcacatccgcaaagataatg
aaggatgaaaagggtgcatcaaagggattcggatttgtttgtttctcttcaccagatgaa
gcaactaaagcagtttcagaattatcaggcaagatgattggatctaaaccactttacgtt
tcattagcacaacgtagagatgttagacgccaacaattggagtcacaaattgctcaacgt
aatcaattaagattacaacaccaagctgctgcaggagtaccaatctcaggattcatgcca
ggtgcaccaatgtactaccaaccaccaccaggagcttacccaggaggtagatcaatgtat
ggtcaaccaggattcgctccaccaagaccaagaggttatccagcaggacaacaagttcca
ggtatgccaattccatcaccatatggaccaccaccacaaggttacatgccaacgaattac
agaccagcaagaccagcacgtacgaacggagcacaagtccaaggtggatcaccagcacca
aacgttagaccagcagtgccagctggtggaccaggaccaggaccaagaccagcaggtgta
ccagtcagaccagcacaaggtggtaaaccagctaagcaagaaggtggaggacaaatttct
gcatcagtattggcgaatgcaccacctgcagagcaaaagcaaatgcttggtgaagcgctc
tacccaaagatcttcaacgtgcaaccagagttggctggtaagataacaggaatgttatta
gaaatggagaactctgagttactcttcttattggagaatgaagacgcaatgaagagcaag
gttgatgaagcgattgcagtacttaacgagtaccaagatgaagacgcagcagaaggtgcc
ggtaccggtgctggtgctgagccaacgtcaactgcttaa
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