Wallemia ichthyophaga: J056_002953
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Entry
J056_002953 CDS
T03457
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
wic
Wallemia ichthyophaga
Pathway
wic03022
Basal transcription factors
wic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
J056_002953
09124 Replication and repair
03420 Nucleotide excision repair
J056_002953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wic03021
]
J056_002953
03400 DNA repair and recombination proteins [BR:
wic03400
]
J056_002953
Transcription machinery [BR:
wic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
J056_002953
DNA repair and recombination proteins [BR:
wic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
J056_002953
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
RNase_Zc3h12a
Motif
Other DBs
NCBI-GeneID:
20375905
NCBI-ProteinID:
XP_009266532
UniProt:
R9ANK6
LinkDB
All DBs
Position
Unknown
AA seq
385 aa
AA seq
DB search
MDLNIIQLDQNAIQLNESFTSSLSSLLTGKHIESISKSISTSIDQLDSFATHQWEIILHF
MVGNYTHTPSKGVLFLLENSNLINSSKSSHNITSNGFQFLLQDVQFQLWQLLLQYLSLSQ
IRQMDLVEVTSFLFILGTLELGKDYSIDSLTITQQAMLSDLRDYGLIWQRKNSSKRFYPT
RLATSLTSSAPPLLPTNSSSSFTSASNNKRFIVLETNYRLYAYTSNPLQISILNLFVTLK
ARYPNLVIGVITRDSIRSALSNGITAEQIIGYLSSHAHSQMYRNNPLLPVTVSDQIRLWE
LEKNRLKADDGVLYEDFRSQPDYEILLNYANSYDCVLWSNDSKRLFFVTLQGHQIVREFV
KRRLPGGTGSASTSNSNSSTLSLPT
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggatttgaatatcatacagctggatcagaatgccatacagctaaacgagtcattcaca
agctcattgagtagcttactcacgggcaaacatatagaaagtatatcaaaatccatttct
acaagcattgatcagttagattcattcgctactcatcaatgggagattattctacatttc
atggtcggcaattacacccacacaccttcgaagggtgttctctttctacttgaaaactca
aatctcatcaattcatccaaaagctcgcacaacatcacctcaaatggcttccaattcctc
ttgcaagacgttcaatttcagttatggcagctgctcttacaatatttatctctatctcaa
ataaggcaaatggatcttgtcgaagttacttcgtttctctttatcctcggtacacttgaa
ttaggcaaagattactcaattgattcactcacaataactcaacaagccatgttatcagat
ttacgcgattatggtttaatctggcagcgcaagaactcttcaaaacgtttttatccaact
agactagctacatcgttaacttcgtctgctccaccactcctacctacaaactcatcctct
tcatttacatctgcatccaataacaaacggttcattgttttggaaactaactacagacta
tacgcatataccagcaatccactgcaaatttctattctcaacttgttcgtcactcttaaa
gcacgctacccgaatctagtcatcggtgtaattactagggatagtatcagaagtgcgttg
agcaatggcataacggctgagcaaatcattggctacttatcctcacacgctcattcgcaa
atgtatagaaacaacccactgctgccagttactgtatctgaccaaatacgtttgtgggaa
ttagagaagaacagacttaaagctgatgacggtgtactttacgaggatttcagatcgcaa
cctgattatgagatattgctcaattatgcaaactcatacgattgcgtactctggtctaat
gattctaagcgtctcttctttgttacactccaaggtcatcaaattgtgcgcgagtttgtc
aagagacggttgccaggtgggacgggaagtgcgagtaccagcaatagtaactctagtact
ctatcactaccgacttag
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