Wallemia ichthyophaga: J056_003220
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Entry
J056_003220 CDS
T03457
Name
(RefSeq) Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
wic
Wallemia ichthyophaga
Pathway
wic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
J056_003220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
wic03041
]
J056_003220
Enzymes [BR:
wic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J056_003220
Spliceosome [BR:
wic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
J056_003220
Complex C
U4/U6.U5 tri-SnRNP related factors
J056_003220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
20376172
NCBI-ProteinID:
XP_009270472
UniProt:
R9AF19
LinkDB
All DBs
Position
Unknown
AA seq
1086 aa
AA seq
DB search
MAHNDAWISDAFLTHLGVADGKMVEYAKDIASTAKSTESLYSKLTSLGFPAGADVSNFAA
HLYSAVPKKSKHKHSFNLHESRDSRKKKERLAVDQNSQRYGLLLEDDNDDNGNTPSTSNL
PSKKRDKKSKDKRSFRRRDDDDAWKSDDEDKSRKRARDISPSPPQGGIDDNIEDEDAKER
RLVEEDARERDEFAERMKDKDRDRTKKLVEDRTNDSETVLRRKLADDKDARKEAMPDLRL
RSRQEYLTKREMQQLELLKKSIADEESMFAGVAMSRQEIEELDRKKAALALAEERLRIDD
KVDGYMLPDDYITEQGKIDSKKKNNVLYARYEEGKKGQDPSEFVTDVDQWEKEQTDKAQL
TTGAQDREVTVDDYDFVFDESQTIKFIADSTLSGNKRQTTEQAQMEASIQEAENRAKSID
QVRKSLPIYDYRGDILQAVQDHPVLIVCAETGSGKTTQLTQYLHEAGYTKNGRKIGCTQP
RRVAAMSVAARVAEEMGSKVGYDVGYSIRFEDMTTDKTMIKYLTDGMLLREFLTEPDLAS
YSALIIDEAHERTLSTDILFGLVKDIARYRPDLRLLISSATMDAEKFSEYFDDAPVFYGE
SASEEIESVTDTAAVPGRRYPIDIHYTPQPEANYLHAAVTTVFQIHTTQPRGDILVFLTG
QDEIEAAAENIQETARVLGDRIPELLVCPIYANLPSEMQAKIFEPTPQGARKVVLATNIA
ETSITIDGVVFVIDPGFVKQNAYNPRTGMSSLIVTPCSRAAAKQRAGRAGRVGPGKCFRL
YTKWAHNNELDESTVPEIQRTNLGMVVLMLKSLGINDLIGFDFMDPPPGETIIKALEMLY
ALGALNSKGELTKMGRRMAEFPVDPMLSKSILASEGYGCTDEVLSIIAMLSESASLFFRP
KDKKMHADKARQNFIKPGGDHFTLLNVWQQWADTGFSQQWCYENYVQYKVLCRVRDIRDQ
LAGLCERVELFVESSVKADDIIPIQKAILSGYFYNTARMDKGGGSYRTLKTNQTVHIHPT
SSAFNMQPPPRHMLFYELVLTSKEYMRQIMPIQSSWLAEVAPHYFTSQDLQDLNTSNRKM
PKAVGK
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggctcacaatgatgcgtggatcagcgatgcgtttttaactcatttaggcgttgcagat
gggaaaatggtcgaatacgctaaggatattgcatccactgccaaatcaacagaatccctc
tactccaaactgaccagcctcggtttcccagctggcgcagatgtttccaatttcgctgcc
catctctacagtgcagtgcccaagaaatcaaagcacaagcattcattcaatttgcacgaa
tcaagggactctaggaaaaagaaggagcgactcgccgttgatcaaaactcgcaaagatac
ggtcttctcttggaagatgacaacgacgacaacggcaacactcccagcacctccaatctc
ccatctaagaaaagagacaaaaaatcaaaggataagcgatcttttagaaggagagatgac
gacgacgcttggaagagcgatgacgaggataaatcccgaaagcgtgcgagagatatctcc
ccatctcctccccaaggtggaatagatgacaatattgaagacgaggatgctaaggagaga
agattggttgaagaggatgctcgagagcgtgatgaattcgccgagcgtatgaaagacaaa
gaccgagaccgcaccaagaagctcgtcgaagatcgcaccaatgacagcgagacagtgcta
cgaaggaagctcgccgacgataaagacgcgcgcaaagaagctatgcctgatctccgtctc
cgttcgcgccaggaatacctcactaagcgtgaaatgcagcagttggaattacttaagaag
agcatcgctgatgaagagtccatgtttgctggggtggccatgtccaggcaagaaattgag
gaactagatcgcaagaaggctgcactcgcactcgctgaagaacgtctcaggattgatgac
aaagttgacggttacatgctcccagatgactatatcaccgagcaaggtaaaatcgattcc
aagaagaagaataacgttttatatgcacgctatgaggagggcaagaagggtcaggatcct
tctgagtttgttactgatgtcgatcagtgggagaaagagcaaactgataaggctcagctc
actaccggtgcccaagacagagaagtgactgtagacgattatgactttgtctttgatgag
tcccagacaatcaagtttatcgccgattccaccctctcaggcaacaagagacagacaacc
gaacaagctcagatggaggcttccatacaggaggctgaaaatagagcaaagtccatcgat
caagtcaggaagtctctccctatctatgattacaggggcgatatactacaggctgtccaa
gaccatcccgtgcttatcgtctgtgcagagacaggatctggaaagaccactcaactcacc
caatacctccatgaagcgggatacactaagaatggacgtaaaattggatgtacgcagcct
agacgtgtcgctgcaatgtctgttgctgccagagtggctgaggagatgggtagcaaggtt
ggatatgatgtcggatattctattcggtttgaagacatgacgactgacaaaactatgatt
aagtacctcactgatggtatgcttcttagggaattcctcactgaacctgatctcgctagc
tactcggctctcatcattgacgaggcgcatgaacgtacactctcgactgacattttgttc
ggcttggtgaaagacattgctagatacagacctgatcttaggctattgatatcttccgcg
acgatggatgccgagaaatttagcgagtattttgatgacgcaccggtcttctatggtgag
tcagcttcagaagagattgagtcggtaactgatacggctgcagtacccgggcgtcgctac
ccgatcgatattcactacacaccgcaacccgaagccaactacctacatgcggcggtgaca
acggtgtttcaaattcacactacgcaaccgcggggcgatattctcgtctttttgactggt
caggacgagattgaagctgcggcggagaatatacaggagacagcgcgtgtgcttggcgac
aggatacctgagctgctcgtgtgtcccatctacgcaaacttaccttcagaaatgcaggct
aagatattcgagccgacgccgcaaggtgcacgcaaggtggtgcttgcaactaacattgcc
gagacgtctatcacgattgatggtgtcgttttcgtcattgaccccggtttcgttaagcaa
aacgcttataacccccgcactggcatgagcagcctgatcgtaacgccgtgctctcgtgca
gctgctaaacagcgcgctggacgtgccggtcgtgttggcccgggtaaatgtttccgcctc
tacaccaaatgggcacacaataacgagctcgacgagagcactgtgccggaaattcaacgc
actaatctgggcatggtcgtgcttatgctgaagagtttgggtattaacgatcttatcggg
ttcgattttatggatcctccgccaggagagactatcataaaggcactcgagatgctctat
gcacttggcgcactcaatagcaagggagagctaactaagatgggtagaagaatggcggag
tttccggtcgaccctatgctgagcaagagcatattagcgagtgagggctacgggtgcacg
gatgaggtgctcagtataatcgctatgctttccgagtctgcctctctgtttttccgccct
aaggataagaagatgcatgcagacaaagctagacagaacttcatcaagcctggtggagac
cactttacgctgctgaatgtatggcagcagtgggccgataccggatttagtcagcagtgg
tgttacgagaactatgtgcagtacaaggtgctctgtcgggtgcgagatattcgagatcaa
ttggcaggactgtgcgagagggtggagctctttgtcgagagcagcgtgaaggctgacgat
atcatacccatccagaaggccatcctgagcggctacttttacaacaccgcgcggatggac
aagggaggcgggtcgtataggacgctgaaaaccaaccagactgtgcatatacacccgact
agctcggcattcaacatgcagccgccacctcgacacatgctcttctacgagctcgtactc
acttcgaaagagtatatgcgacagataatgcctatccagtccagctggctggcagaagtc
gcaccgcactacttcacgtcgcaagacctccaggaccttaacacgagcaacaggaaaatg
cccaaagcggtagggaagtag
DBGET
integrated database retrieval system
