Wallemia ichthyophaga: J056_003528
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Entry
J056_003528 CDS
T03457
Name
(RefSeq) ATP-dependent RNA helicase DED1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
wic
Wallemia ichthyophaga
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wic03019
]
J056_003528
03041 Spliceosome [BR:
wic03041
]
J056_003528
03036 Chromosome and associated proteins [BR:
wic03036
]
J056_003528
Enzymes [BR:
wic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J056_003528
Messenger RNA biogenesis [BR:
wic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
J056_003528
mRNA cycle factors
Common to processing body (P body) and stress granule
J056_003528
Spliceosome [BR:
wic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
J056_003528
Chromosome and associated proteins [BR:
wic03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
J056_003528
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
20376480
NCBI-ProteinID:
XP_009267026
UniProt:
R9ASB9
LinkDB
All DBs
Position
Unknown
AA seq
555 aa
AA seq
DB search
MPGAFSRSPSNASFAGRPSPAKPSLGSNLNRRPGGGGKWIDGQHIPAPRNDKMEIDLFGE
PGDPLNSSTGINFEKYAAIPVEAKGHGVPDPITEFTNPPIDPHLIENIRFARYTTPTPVQ
KYSVPIVGSGRDLMACAQTGSGKTGGFLFPILSACFSNGPSQVQPPNPPKYGGTKVYPTA
LILAPTRELVNQIHEEAKKFAYRSWVKPAVVYGGAPSGEQMRQLDRGCDLLSAAPGRLCD
FIDRGKISLANVKYLVLDEADRMLDMGFEPQIRKIVQGCDMPTVHDRQTLLFSATFPREI
QMLARDFLKDEVFLSVGRVGSTSENITQTVEWAEDFEKKSVLLDILEGHMEPDGNNRTLI
FVETKRMADILCDFLLQNSLRATAIHGDRDQREREYALSTFKKGTNPMMVATAVAARGLD
IPHVSLVVNYDLPSDIDDYVHRIGRTGRAGNTGHAISFFNQNNLNIVRSLSEILKEAKQE
IPDWFAGCMQQASVFGGRGRGRGGSRGGRGMSSRGGGMSSGGFGSPFRRTNGSGWDNSSG
NSSFSHDSPAYWIQK
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgccaggcgctttctctagatccccttcaaacgctagctttgcaggcagaccttctcca
gcaaagccttctctcggctcaaatctcaatcgtagacctggcggtggcggtaaatggatc
gacggtcagcacattcctgctcctcgtaatgacaaaatggaaattgatctctttggtgag
ccaggcgatcctctcaactcaagcactggtatcaactttgaaaagtacgctgctatccca
gtagaagctaaaggtcacggtgttcctgaccctatcaccgaattcacaaaccctccaata
gatcctcatctgattgaaaacatcagatttgctagatacactacgcccactcctgttcag
aaatactctgttccaatcgtcggatctggtagggatttaatggcctgtgctcaaactggt
tcaggtaaaactggtggtttccttttcccaatcctctctgcatgtttctcaaatggtcct
tcccaagttcaacctcctaaccctccaaaatacggtggtactaaggtttatccaaccgct
ttgatccttgcccctactagagaactcgtaaatcaaattcacgaagaagctaagaaattc
gcttacagatcttgggttaagcctgctgtcgtttatggtggcgctccatctggcgaacaa
atgagacaattagatagaggttgcgatttattgagtgctgccccaggtagactttgcgat
ttcattgacagaggtaaaattagcttagcaaacgtaaaatacttggttcttgatgaagct
gatagaatgttggatatgggtttcgagccacaaatcagaaagattgtgcagggatgcgat
atgccaactgtgcatgatcgtcaaacactcctcttctcagcaacattcccaagagagata
cagatgttggcgagagatttccttaaggatgaagttttcttgtcggttggtagagtcggt
agtacttcagaaaacattacacagacagttgaatgggctgaggactttgaaaagaagagc
gttttgcttgatatactggaaggccacatggagcctgatgggaacaacagaacattgata
ttcgtagaaacaaagagaatggcagacattctgtgcgacttcttattacaaaacagtttg
agagccacagcaattcacggtgatagagatcagagggaaagagagtatgcattgagcaca
ttcaaaaagggtactaacccaatgatggttgccacagccgtcgcagcacgtggattagat
attcctcacgtctcactcgttgtcaattacgatttaccttctgatattgacgactacgta
catagaattggtagaacaggtagagctggtaacacaggacatgctatctcattcttcaat
caaaacaaccttaatatcgttagaagcttgtctgagattctcaaagaagctaagcaggag
atacctgattggtttgcgggttgtatgcaacaagccagtgtgtttggtggaagaggtaga
ggcagaggaggatctagaggaggaagaggaatgtcatctagaggcggtggcatgtcttca
ggagggtttggatcaccatttagaagaactaatggatctggttgggataattcttcggga
aattcttccttctctcacgattcaccggcttattggatacaaaagtaa
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