Wallemia ichthyophaga: J056_003679
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Entry
J056_003679 CDS
T03457
Name
(RefSeq) ATP-dependent RNA helicase DBP2-A
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
wic
Wallemia ichthyophaga
Pathway
wic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
J056_003679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
wic03041
]
J056_003679
03009 Ribosome biogenesis [BR:
wic03009
]
J056_003679
Enzymes [BR:
wic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J056_003679
Spliceosome [BR:
wic03041
]
Complex A
U1 snRNP components
U1 related factors
J056_003679
Complex B
J056_003679
Ribosome biogenesis [BR:
wic03009
]
Eukaryotic type
Pre-60S particles
Helicases
J056_003679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
VPS9
ResIII
Motif
Other DBs
NCBI-GeneID:
20376631
NCBI-ProteinID:
XP_009267170
UniProt:
R9AIH6
LinkDB
All DBs
Position
Unknown
AA seq
1597 aa
AA seq
DB search
MADNIPSSQHTQHTQHIADTLCSAHTDNTSPPLTHAMFQRKPHTASATSLSVEASSSAGQ
GKDATQRLQIQQLKATAQNLGLPSDTVGYKMLEALATAPAVDDALSWHDVLALASSDKAV
LLLPNITNSFSIPINPSQIRNHVVFTTTTPHSGAGLSPADSPAQVLAASGLRGSIDSGKI
VFHGHLSQNYAESNLFDSNTRSSLLSSLPPLTTHHGFETKFPTHKCLLLGSLSIPSPPTP
KLSTRSRSSSLTNAAKLQSKSTFATFFGGGDRRTSILTPSFSNQTEETELEFGPPVEITV
RTIDNSINYDDVKRELIKSVMDRIRERLEGLPRKAIARVVQFVVQFYPATPSAAALLAKR
APSKKSGSAAPKLSDPETSTAVIQELYIKVRDEVSSLLWNERLSRRESADEEITEREKEA
LEEEVEDEASLAVERVESVVTTEIFDLLFIPTNAEIIRDDTLASRIAALNMLDLNLNHLG
VQVPDAPLNGQNEGEAEADARKGLEDVVNDCGQELQKIGGCLSPAVKIDVLIQAHKKIVD
GLAKLPPIRLRPESDSQEDQVEDVKSQSEDNDKGKPPSSADLILPMLIFSMVKSNPSQII
SNLLFIQRFRAEGMMSGEASYALVNATAAVEFLSSVDLSELGLGGSDRIVGFGDNVEQST
LPLQPVQVESDELTSKIRSKVTGEIGDLAGSANKVFTGVVDSGWGALRGIIDRKENTVSP
PTIVRTADELTSSPVDSRPQSMFNRRASSLSVASIAANVANIASGKDNKPRLNTLPDNDT
GDRELVNMSSSVSSREIPVSQSLDFEHKRKDSDARSVKSMSSMKSYNSNKEESFGERMNI
TNRLASIPGLGRFSLNQTSPQASQETALGASPSQGSLLNSFFPFKGNHSRTVSYNNNHST
SFEPPNAQFLNAHADELRLSDVKTNILRRRIPNKRHNGINSNSSNNRSNYACRYVDSVKE
PCDIKRTEAETHGKQCKESAKHSNSRERETISGISWLPVKVYTAKNNNQQDRAYIGEAQA
TDNGNQQIKAYRSHAKKATNYFEEMSYSNGGYDSYGGSGGYSRGGGGYSRGGDSYGGGGY
GGGGGYGRDRGGSSAYGSGGGRGYGGGGGGGYDDGFGNLGQPDFNNLTKFEKNFYVEDKR
VQDRSEQEVADFRKKHDMSIVGTGVPRPITGFDEAGFPNYILTEINKMGFPSPTSIQCQA
WPMALSGRDMVAIAQTGSGKTISFALPAMVHINAQPLLSPGDGPIALILAPTRELAVQIQ
EECTKFGKTSRIRNTCVYGGVPKGPQIRDLVRGAEIVIATPGRLIDMLDMGKTNLKRVTY
LVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATWPKEVKALAHDFLHNMIQVNIGS
LELSANHNVKQIIEVCSEFDKRGRLVQHLDQISQENAKVLIFIGTKRVADDLTKYLRQDG
WPALAIHGDKQQQERDWVLAEFKSGRSPIMLATDVASRGLDVKDIGYVINYDFSSNVEDY
IHRIGRTGRAGTKGTSITFFTTENAKNSRDLIKILREAKQDVPTELDEMASFGGRGGGGG
RGGYGGRGRGRGGFRGGGGGGFSSGANSFSGGNMRRW
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atggcagataatattccatcgtcgcagcacacgcagcatacgcagcacatagctgacacg
ctctgctctgcccacacggacaatacatctccaccgctcacacatgcaatgttccagcgc
aagccgcacaccgcatcggcgacgagcctcagcgtcgaagcaagttcgagcgcgggacag
ggcaaagacgccacacagcgcctgcagatccagcagctcaaagccacggcacagaatcta
ggcctgccgagcgataccgttggatataagatgctggaggcactcgcaacagctccagca
gttgacgatgctctatcatggcacgatgttctcgccctcgcatcttcagataaggctgtt
ttgctactgccgaatatcacaaactctttcagcatacccattaatccatctcaaatcaga
aatcacgttgttttcactaccaccactcctcattccggtgccggtcttagtcctgctgat
agccctgcgcaggttttggctgcaagcggtttgcgtggtagcattgactccggcaaaatt
gtgtttcacggccacttaagccagaactatgcggaaagtaatctgtttgatagcaataca
agatcctcactgctgagcagtctacctcctcttacaacccaccacggctttgaaactaaa
tttccaacccacaaatgcctcttgcttggatcgctatctataccatcacctccaactccc
aagctatctacccgttccaggtcctcctctctaacgaatgctgctaagttgcagagcaag
tcgactttcgctactttcttcggcggtggtgatagacgcacttccattctcacgccctcg
ttttccaaccaaacagaggaaactgagctcgagtttgggcctccggttgaaatcaccgtg
cgaaccatcgataacagcataaactacgatgatgtcaagagggagcttatcaaatcggtg
atggatcgtataagggaaaggttagaagggttgcctagaaaagctattgcaagggtggta
caatttgttgttcagttttatcctgctactccgtcagctgctgccttgctagccaagcgg
gcaccatcgaagaaatcaggttccgctgcaccgaaactgagtgatccagaaacgagcaca
gctgtaattcaagagctctacatcaaggttcgtgacgaggtcagttccttgttgtggaac
gaacgactgtcccggagggagagtgctgacgaggagattactgagcgggagaaagaggcg
ttggaagaagaggttgaagatgaagcatccttggcagttgaacgtgttgagagcgtagtc
actacagagatatttgatctactcttcattcccaccaacgctgagattataagagacgat
actttggcatcgaggattgctgctcttaacatgctcgatttgaacttgaatcatttaggc
gtacaagtccctgatgcaccactcaatggacagaatgagggcgaagctgaagctgacgca
aggaaagggcttgaagatgttgtgaatgactgcggtcaagagctgcaaaagataggtggc
tgtttgagtccagccgtcaagattgatgtcctcattcaagcacataagaagatagttgac
ggtttggcaaagctaccgccaattagactgcgcccagaaagcgacagtcaggaagatcag
gtggaggatgtcaaatctcagagtgaagataatgacaaaggaaagccacccagtagcgca
gatttgatacttccaatgcttatcttctcaatggtaaaatcaaatccatcgcaaatcatt
agcaatcttttgttcattcagcgttttagagccgaggggatgatgtctggtgaagcaagc
tatgcattggtaaacgccacagcagcagttgaattcctgagctcagtcgacctttcagag
ctaggcttagggggtagcgacagaatcgtaggttttggggataacgttgagcaatccaca
cttcctttgcaaccggttcaggtggaatcagatgagcttacaagcaaaataagaagcaag
gttacgggtgaaataggggatttagctggctctgcaaataaggtatttacaggagttgta
gattcaggatggggagcgttacgaggtattattgatcgcaaagaaaacacagtctcgcca
ccaacgatagtaagaacagcagatgagctcacttctagtcctgtcgacagccgcccgcaa
agcatgtttaatagacgcgcaagcagcctctcagttgcaagtatcgcagcaaatgtcgcc
aacatagcgagcggcaaagacaacaaacctcgactaaatacgctgccggacaatgacact
ggagatagagagcttgttaacatgtctagctcggtgtctagcagggaaataccagtctca
cagagccttgactttgagcacaagcgcaaagattcagatgcaagaagcgttaagtcaatg
agcagtatgaagagctacaatagtaacaaagaggaaagttttggtgagaggatgaatata
actaatcggttggctagtattccaggtctagggaggttttcactcaatcaaacttcgcct
caagcatcacaggaaactgcactaggtgcatcaccatctcagggctcactgctaaactca
ttttttccattcaaaggtaatcattcgcgcacagtttcatacaataacaaccattctact
tcatttgaaccaccaaacgcacaattcctcaatgctcacgccgatgaacttcgattaagc
gatgtaaagacaaacatattaaggagaaggattccaaacaaacgacacaatggcatcaat
agcaatagcagcaataatcgcagtaactacgcttgtcgatacgtcgatagtgtcaaagag
ccatgtgatatcaagcgtacagaggctgaaacacatgggaaacagtgtaaggaatctgct
aaacacagcaacagccgtgagagagagactatcagtggtatcagttggttacctgttaaa
gtatataccgctaaaaacaacaatcagcaagaccgggcctatatcggagaagcacaggct
acggataacggcaatcaacagatcaaagcgtatcgaagccatgctaagaaagcaaccaat
tactttgaagaaatgtcttacagcaacggtggctacgactcttatggtggttctggtggt
tactctcgcggtggtggtggttactcccgcggtggtgacagctatggcggtggtggttac
ggcggcggcggcggctatggtagagacagaggtggctcatccgcttacggcagcggtggt
ggcagaggctacggcggcggtggtggtggtggttacgacgatggcttcggtaacctcgga
cagccagacttcaacaacttaaccaagtttgaaaagaacttctacgttgaagataaaaga
gtccaagatcgcagcgagcaagaagtcgctgactttagaaagaagcacgatatgtccatc
gttggtacaggcgtccctagaccaatcaccggtttcgacgaagctggtttccctaattac
atcttgactgagattaacaaaatgggtttcccttccccaacctccattcaatgtcaagcc
tggccaatggctttaagtggtagagacatggttgctatcgcccaaactggttccggtaag
accatctctttcgctttgcctgccatggtacacatcaatgctcaacctttgttgtctcct
ggtgacggtccaatcgccttgatcctggctccaacccgtgagcttgctgttcaaattcaa
gaagaatgcacaaagttcggtaaaacttcaaggatccgtaacacctgtgtctacggtggt
gttccaaagggccctcaaatcagagatttagttagaggtgctgaaatcgtaatcgctacc
cccggtcgtttgatcgatatgctcgatatgggcaaaaccaacctcaagcgtgtcacttac
ttggtcatggatgaagctgaccgtatgcttgatatgggtttcgagcctcaaatccgcaag
atcgtttctcaaatcagacctgacagacaaacactcatgttttcagctacatggccaaag
gaggtcaaagctttggcccacgatttcttgcacaacatgattcaggttaacattggttct
ttggagttgtctgccaaccacaatgtcaaacaaatcatcgaagtctgtagtgaatttgac
aagcgtggcagactcgtccaacaccttgaccaaatctcacaagaaaatgccaaggttctc
attttcattggtacaaagcgtgttgccgatgatctcacgaagtacctccgtcaagacggc
tggcctgcactcgccattcacggtgacaagcaacaacaagagcgtgactgggttttagct
gagtttaagtctggcagatcaccaattatgcttgctactgacgttgcatcacgtggttta
gatgtcaaggatatcggatacgttatcaactacgattttagcagcaatgttgaagattac
attcacagaatcggtagaactggtagagctggtactaagggtacatctatcaccttcttt
accactgagaatgcaaagaattctcgtgatcttattaagattttgcgtgaagctaagcaa
gatgtaccaaccgagttagatgaaatggcttcatttggtggccgcggtggtggcggtggc
cgtggtggatacggtggtcgcggtagaggccgtggcggtttccgcggaggcggtggtggc
ggtttcagcagcggtgccaacagtttttctggtggtaacatgagacgttggtaa
DBGET
integrated database retrieval system
