KEGG   Wallemia ichthyophaga: J056_003902
Entry
J056_003902       CDS       T03457                                 
Name
(RefSeq) Replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
wic  Wallemia ichthyophaga
Pathway
wic03030  DNA replication
wic03410  Base excision repair
wic03420  Nucleotide excision repair
wic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:wic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    J056_003902
   03410 Base excision repair
    J056_003902
   03420 Nucleotide excision repair
    J056_003902
   03430 Mismatch repair
    J056_003902
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:wic03032]
    J056_003902
   03036 Chromosome and associated proteins [BR:wic03036]
    J056_003902
   03400 DNA repair and recombination proteins [BR:wic03400]
    J056_003902
DNA replication proteins [BR:wic03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    J056_003902
  DNA Replication Termination Factors
   ELG1-RFC complex
    J056_003902
Chromosome and associated proteins [BR:wic03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    J056_003902
DNA repair and recombination proteins [BR:wic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     J056_003902
  Check point factors
   HRAD17(Rad24)-RFC complex
    J056_003902
SSDB
Motif
Pfam: AAA Rep_fac_C DNA_pol3_delta2 Rad17 AAA_22 RCF1-5-like_lid AAA_11 AAA_16 AAA_24 AAA_assoc_2 AAA_30 RuvB_N AAA_14 DEAD Mg_chelatase AAA_19 AAA_5 SLFN-g3_helicase ResIII AAA_2 AAA_7 AAA_28 DUF815 nSTAND3 AAA_23 AAA_3 Viral_helicase1 AAA_18 Cdc6_lid RNA_helicase bpMoxR AAA_25 DUF2247 SgrA_ig-like
Other DBs
NCBI-GeneID: 20376854
NCBI-ProteinID: XP_009267386
UniProt: R9ANG9
LinkDB
Position
Unknown
AA seq 335 aa
MPANESLKPWIEKYRPRTINDVAAQDHTIRVLNKQLNNANLPHMLFYGPPGTGKTSTILA
LSRQLFGQDLVNSRVLELNASDERGISVVRDKIKNFAKQAPKASSSSNTPSYKIIILDEA
DSMTQDAQSALRRTMETYSKSTRFCLVCNYVTRIIEPVASRCSKFRFKPLDDTDTKARLE
FIAKEEHIDYEDGVIDALISTTHGDLRQAITYLQSATRLHQATSTKIIPDTITEIAGTIP
QHIIDNIVSVCSNKKNFKEVQSTLKQIHLNGYASAQILAQLHDKVIDSSSIADSSKAKSV
LAIAEADKALTDGADDELQMLNLAMKLQKAFNRVN
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgccagccaacgaatcattgaaaccttggatagagaaatatagaccacgcactatcaat
gacgtagctgcacaggatcatacaatacgagttcttaacaaacaactcaacaacgctaat
ttaccacatatgttattctatggtccacctggtactggtaaaacatccactattctcgct
ttatccaggcaattatttggccaggatctcgtaaatagtcgcgtactcgagttaaacgcg
tctgatgagcgtggtattagcgttgttcgcgataaaattaaaaactttgcaaaacaagca
ccaaaggcttcttcttcatccaatactccttcttacaagattattatactcgatgaagct
gattctatgactcaagatgctcaatctgctttgaggcgtacaatggaaacttattccaag
tcgactagattctgcttagtctgtaattacgttactagaatcatcgaacctgtcgcttct
cgttgttcaaaattccgctttaagccacttgacgatactgataccaaagctagactcgaa
tttatcgctaaagaggagcatattgattatgaggatggtgtaattgatgcactcataagc
acaacccatggcgacctcagacaggctatcacataccttcaatcagctacacgcttacat
caagcaacatcgacaaaaataattccagatacgattactgaaattgccggtactatacct
caacacataattgataacatagtgtctgtttgttcgaacaaaaagaattttaaggaggta
cagagcacactcaagcaaatccatttgaatggttatgcttcagctcagatacttgcacag
ctccatgacaaagttatagacagttctagtatagctgactcctcaaaagctaaatcagtg
ttagccatcgcagaagcagacaaagcgctaaccgatggagcagatgatgagcttcaaatg
ctcaacctcgcaatgaaactgcaaaaagcatttaaccgtgtcaactga

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