KEGG   Wallemia ichthyophaga: J056_003988
Entry
J056_003988       CDS       T03457                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
wic  Wallemia ichthyophaga
Pathway
wic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:wic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    J056_003988
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:wic03041]
    J056_003988
Spliceosome [BR:wic03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    J056_003988
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st WDR90_beta-prop_4th ANAPC4_WD40 PRP4 Beta-prop_DCAF12 Beta-prop_EIPR1 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_SCAP Beta-prop_WDR19_1st Nbas_N Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_RIG_1st Beta-prop_IFT140_1st RMC1_N Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 20376940
NCBI-ProteinID: XP_009267472
UniProt: R9AHT5
LinkDB
Position
Unknown
AA seq 499 aa
MDSQMKDFDDLVYDDKYEMGTGQELARAEAQASEDMFERRKVLRTLAVPTDDTKVRERLR
AMALPMTLFGERNEDRRNRLKSIIADMQQEAGESSKVESESESEDEEEFYTVGPQDLLNA
RKWIAEYSIPRTKNKLEIERQDWKTPLKSIIDARKRTFEYIKSFSVLGSQVGDSRPISQV
KFSPNNQLLATGSWSGSLKLWDIPNCNHQMTFRGHEGLVGGVAWHPESTLSQSKASVNLA
SGSQDNTVALWSLDKDTPLATLKGHTHQVRRVAFHPSGRYVGSASFDETWRLWDVETQTE
LLLQEGHSKEVYALAFQDDGALVGSAGMDAIGRTWDMRTGRTAMVLDGHADKILAMDFSP
NGYQCATGSGDGNIMIWDLRALKSITSMPAHNISVGDVKFYRQPEPILRSRGDTQDVKMD
ESTDTDEMTPIVKEPYSNGLFLASAGFDGYTKLWSADDWICQKAIRENSKIMSVDISTNG
KHIATGEWSRSFKLFGTDL
NT seq 1500 nt   +upstreamnt  +downstreamnt
atggacagccaaatgaaggatttcgacgatctcgtctatgacgacaagtacgaaatgggc
actggccaggaactcgccagggcagaggctcaggcttccgaggacatgttcgagagaagg
aaagtgcttaggactctcgcagtaccaacagacgataccaaagttagagagaggctgcga
gcaatggcactgccaatgactctgttcggtgaacgtaacgaagacagaaggaatcgtctc
aagtcgattattgcagatatgcagcaagaggctggcgaaagctctaaagtagaaagcgag
agtgaatcggaggatgaagaggagttctataccgtcggtccacaggatctgctaaacgcc
aggaaatggatcgcagagtactcaatacctcgtacaaaaaacaagttagagatagagcgc
caagactggaaaacaccactaaaatcaatcatcgacgcgagaaagcgcacgttcgaatac
ataaagtcattcagcgtactgggatcgcaggttggcgacagccgaccgatatcccaggtc
aagttctcacctaacaaccagctgttagctaccggtagctggtctggcagcctgaagctg
tgggacatacccaactgcaaccaccagatgactttcagaggccatgaaggcctagtaggt
ggcgttgcctggcatcctgaatccacgcttagtcagagcaaagcaagcgtcaacttagcg
tcaggttctcaggataacacagtcgccctgtggtctttggacaaggatacaccgttggcg
actctcaagggacatacccaccaagtgcgaagagttgcgttccatccttcaggtagatac
gtaggcagtgcatcattcgacgagacatggagattgtgggatgttgaaacacaaactgag
ctgctgttgcaagagggacattcgaaggaggtctacgcactcgctttccaagacgacggt
gcgctggtgggatctgcaggtatggacgctattggacgaacctgggatatgcgcactgga
aggactgccatggtgttagatggacatgcagacaagattctcgcaatggacttctcgccg
aatggctaccaatgtgcaactgggtctggcgatggtaatatcatgatatgggatcttcga
gcgttaaaatctataacgtcgatgcctgcacacaatatctctgttggagatgtcaagttc
tatagacaacctgaacctattctcagatctagaggcgacactcaagatgtgaagatggac
gaaagcactgacactgacgaaatgacacctattgtgaaagaaccttactccaacggcttg
ttcttagctagcgctggatttgacggttacaccaagctttggagtgcagacgactggata
tgccagaaggcaatccgcgaaaactctaagataatgtcagttgatatatcaaccaacgga
aagcacatagcgacgggcgaatggtcacgctcgttcaagttatttggaactgatttgtaa

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