Wallemia ichthyophaga: J056_004122
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Entry
J056_004122 CDS
T03457
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
wic
Wallemia ichthyophaga
Pathway
wic03013
Nucleocytoplasmic transport
wic03015
mRNA surveillance pathway
wic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
J056_004122
09122 Translation
03013 Nucleocytoplasmic transport
J056_004122
03015 mRNA surveillance pathway
J056_004122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wic03019
]
J056_004122
03041 Spliceosome [BR:
wic03041
]
J056_004122
Enzymes [BR:
wic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J056_004122
Messenger RNA biogenesis [BR:
wic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
J056_004122
Spliceosome [BR:
wic03041
]
Complex C
Other components
EJC/TREX
J056_004122
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
J056_004122
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Epimerase
DEAD
Helicase_C
GDP_Man_Dehyd
ResIII
Polysacc_synt_2
Cas3-like_C_2
RmlD_sub_bind
CMS1
Motif
Other DBs
NCBI-GeneID:
20377074
NCBI-ProteinID:
XP_009267598
UniProt:
R9AML6
LinkDB
All DBs
Position
Unknown
AA seq
759 aa
AA seq
DB search
MTNSSSSGQENTSVVLVTGGTGLVGSAINKVINEEAIGSRFGRQPNESWVFLKSTDGDLR
NYAEARAVFAKYSPTHVIHLAAKVGGLFANMKYKLDFLRENMLINDNVLHLSHEFKVHKL
ISCLSTCVFPDQVSYPLREESVHLGPPHSSNFGYAYGKRMIDVQNHAYNDQFGNQFTSAI
PTNIFGPNDNYSLEYAHVIPALIHKCYLANKEKKPFVVMGSGKPLRQFIYSLDLARLFIW
QLREYHSIEPVILSVGENEEVSIKEVADAVVKAVGFQGEYVLDTSKPDGQYRKPASNDKL
MRCIGNFQFTPFEKALEESVDWFVRNYDSLRKADNEDLIDYEEEEVAPQQQQEQQPAQPT
EEGKDKKGSYVGIHSTGFRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGMDVVCQA
KSGMGKTAVFVLASLQQLEPVDGEVSVIVLCHTRELAYQIKNEYGRFSKYVPNVRTSVFF
GGTPVAADQEILKNKEKCPHVIVGTPGRINALVRDGSLNGKAIKHFVLDECDKMLDQLDM
RRDVQEIFKATPHHKQVMMFSATLSKEIRPVCKKFMQSPLEIYVDDETKLTLHGLQQHYV
KLSESTKNRKLNDLLDSLDFNQVVIFVKSTLRANELDKLLRECNFPSICIHSRMSQDERI
ARYTKFKQFESRILVATDIFGRGIDVERVNIVVNYDTPTDADSYLHRVGRAGRFGTKGLA
ITFVSTEDDDNVLKAIQSRFEVAIPELPETLEASTYMTS
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacagcagtagcagcggccaagagaacacatctgtcgtactcgttacgggtgga
acaggattagttgggagtgcaataaacaaagtgatcaatgaggaggctattggaagtaga
tttgggagacagccgaacgaatcctgggtcttcctcaaatcgactgatggcgatctgcgc
aactacgcagaagcgcgtgcggtattcgctaaatactccccgacgcacgtcatacacctc
gctgcgaaagtcggtggactgttcgccaacatgaaatacaagttagacttcctgcgcgag
aacatgctcattaacgacaatgtcctccacttgagccatgaatttaaggtacacaaactt
atatcttgcctgtccacttgcgtcttccctgaccaagtatcctatccgctgcgcgaggag
agcgtgcacctaggaccaccacattcatctaactttggttatgcatatggtaagcgtatg
atagatgtacagaaccacgcgtacaacgaccagttcggtaatcagttcacatcggcaatt
ccaacgaatatctttggtcctaatgacaactacagcttggaatacgcgcacgttataccc
gccctgatacacaagtgctacctcgcaaacaaggagaagaagccattcgtggtgatgggt
tcgggtaagccgttacggcagtttatctactcgttggatctcgctaggctattcatatgg
cagctgcgcgagtatcattctatcgaacctgtcattctctctgtaggggagaatgaggag
gtgagtataaaagaggtggctgatgctgtcgttaaggctgttggattccaaggagagtat
gtccttgacaccagcaaaccagatggacagtataggaagcctgcgtctaacgacaagctg
atgaggtgcatcggtaactttcaattcaccccatttgaaaaggctttggaggagagcgtg
gattggtttgttaggaattacgacagccttagaaaggctgataacgaagaccttattgat
tacgaggaggaggaagtcgcaccacagcagcagcaggagcagcaacccgcgcagcctaca
gaagaaggaaaggataagaagggctcttacgttggcatacactccactggattcagagat
ttcctcttaaagcctgaattgctgcgagcaatctcagatttgggttttgagcatccttca
gaagttcaacaagagtgtattccacaggctattctcggtatggatgttgtatgccaggca
aaatctggtatgggtaagactgctgtcttcgttttggcgtctttgcagcaattggagcca
gttgacggtgaagtctctgtcatcgtcctctgccacactagagaactcgcttatcaaatc
aaaaatgagtacggcagattctcaaagtacgtgccaaacgtcagaacctccgtcttcttt
ggtggtactccagtcgcagccgatcaagaaatactcaaaaacaaggaaaaatgtcctcat
gttatcgttggtacacctggtagaattaacgctttagttagagatggtagcttgaatggt
aaggctataaaacactttgttctcgatgagtgtgataaaatgctcgatcaattggatatg
agaagggatgtacaggaaatattcaaagctacaccacatcacaagcaggtcatgatgttt
agtgccaccctctcgaaagaaattagaccagtctgcaaaaaattcatgcaatctccactg
gaaatctacgtcgacgatgaaactaaacttacattgcacggcttacaacagcactatgtg
aagttatctgaatcaacaaagaatcgcaagctgaacgatctcctcgatagcctcgacttc
aaccaagtcgtcatctttgttaaatcaacactcagagctaacgaactagacaaattactt
agagagtgcaacttcccatcaatttgcatacactctagaatgagccaagacgagagaatt
gcgaggtacaccaaattcaagcagtttgagtctagaatcttggttgcaactgatatcttt
ggtagaggtatcgatgttgagagagtaaacattgtcgtcaactacgatacaccaacagat
gccgactcataccttcacagagtaggtagagcaggtagattcggtacaaagggtctagca
atcactttcgtttctactgaggacgatgacaatgtactcaaagcaatccagtccagattc
gaggttgcaattccagagctcccagagactcttgaagcctcaacttacatgacgtcctaa
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integrated database retrieval system
