Wallemia ichthyophaga: J056_004124
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Entry
J056_004124 CDS
T03457
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
wic
Wallemia ichthyophaga
Pathway
wic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
J056_004124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
wic03041
]
J056_004124
03009 Ribosome biogenesis [BR:
wic03009
]
J056_004124
Enzymes [BR:
wic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J056_004124
Spliceosome [BR:
wic03041
]
Complex A
U2 snRNP components
U2 related factors
J056_004124
Complex B
J056_004124
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
J056_004124
Ribosome biogenesis [BR:
wic03009
]
Eukaryotic type
90S particles
Helicases
J056_004124
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_19
AAA_22
SRP54
nSTAND3
PhoH
AAA_30
ABC_tran
T2SSE
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
20377076
NCBI-ProteinID:
XP_009267600
UniProt:
R9AGL6
LinkDB
All DBs
Position
Unknown
AA seq
727 aa
AA seq
DB search
MGDIKRQKMDTGNPLEGLTPRAVSAKQVDGVMEGTNNPFNGQEFTSQYKSILQGRKQLPV
FNQMQEFYDIFNKNQMMVMIGETGSGKTTQIPQYVAYSDFAHTKGKMIACTQPRRVAAMS
VAKRVADEMDVSLGEQVGYSIRFEDLTTPGTTFLKYMTDGMLLREAMNDNTLSRYSTIIL
DEAHERTLATDILMGLLKEIVPRRPDLKLVVMSATLDALKFQNYFNNAPLLKVPGRTFPV
ETYYTEEPETDYVESAIRTVLMIHQAEDPGDILVFLTGSEEIEDACRKIKLEGDELERNY
KGAVGPLLVVPLYSSLPPQQQTRIFNDAPEPRQPGGAPGRKVVVSTNIAETSLTIDGIVY
VVDPGFSKQKVYNPRIRVESLLPTPISKASAQQRAGRAGRTRPGKCFRLYTENDFVSQLQ
EQTYPEILRCNLANTVLELKKLGINDLVHFDYMDPPAPETVMRALELLNYLGAFDDEGNL
TPLGAIMAEFPLDPQLAKMLIVSPEFKCSNEILSLAAMLSVPNVFLRPESQRKEADDAKA
QFTHPDGDHLTLLNVFHAFKANNGDGNWAWNNYLSHRALISADNVRLQLKRTMERFNLDL
ISTAFEDKHYYTNIRKAVVCGYFMQAAHREGAKGNTYLTIKDQQVVSLHPSTGLDTSPEF
VVYNEFALTTKNFLRTVSAVKPEWLLSLGGEYFNLRTFQDGPLKRALMHAAEKRAGKKDD
KKKRGGK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggagatataaagaggcagaagatggatacagggaatccattagaaggactcacaccg
agagctgtgtctgctaaacaagtggatggagttatggaaggcacgaataatccatttaat
ggccaggaattcaccagccaatataaatccattctacaaggcaggaaacaactcccagtt
ttcaatcaaatgcaggaattctacgatattttcaataaaaatcaaatgatggttatgatt
ggtgaaactgggtctggaaaaaccactcaaatccctcaatacgtcgcttactcagatttt
gcacacaccaaaggtaaaatgatcgcctgcactcaaccacgtcgtgttgctgctatgagt
gtggctaagagagtggctgatgaaatggatgtctcccttggtgaacaagtcggttattcg
attagatttgaggacttgacaactccaggtacaactttcttaaagtacatgactgatggt
atgctcttaagagaggctatgaatgacaacaccctctcacgctactcaactatcattctc
gatgaggctcacgaacgtactctcgcaactgatatccttatgggtcttttaaaggaaatt
gttcctcgcagacctgatcttaaattggttgtcatgtctgcaacccttgacgctctcaaa
ttccaaaactatttcaacaacgcgccacttttaaaggtccctggtagaactttccccgtt
gaaacctattacaccgaagaacctgaaactgattacgttgaatctgcaatcagaactgtt
ctcatgatccatcaagctgaggatcctggtgatattcttgttttcctgactggttctgaa
gaaattgaagacgcttgccgtaaaatcaaactcgagggtgacgaattggaacgcaactat
aaaggtgccgtcggtcctctcctcgtcgtccctctgtactcctctctccctccacaacaa
caaacaagaattttcaacgacgcccctgaaccacgtcaaccaggtggtgctcctggacgc
aaagttgttgtatccacaaacattgccgaaacatccctcaccatcgacggtatagtttat
gtcgtagatcctggcttctccaagcaaaaagtttacaatcctcgcatcagagtggagtct
ctactccctacccctatttctaaagcttcagcacaacagagagctggtagagcagggcgt
acgcgaccaggcaagtgtttcaggctgtacacggagaacgattttgtgtctcagctgcaa
gagcagacgtatccggagatcctgcggtgcaacctcgccaacacggtgctagaattgaag
aagctaggcataaacgaccttgttcatttcgactacatggatccacctgcacctgagaca
gtaatgcgagcgctcgagctactcaattaccttggggcgtttgatgacgagggcaatctt
acaccactaggagccatcatggctgagttcccactcgacccgcagcttgccaagatgttg
atagtgagtccggaattcaagtgcagtaacgagatactttctctcgctgctatgctctcc
gttcctaatgtctttctgcgtcccgagagtcagcggaaagaagcggacgacgccaaagcg
cagttcacacatccagacggcgaccatctcaccttgctcaacgtcttccacgcctttaag
gcgaataatggagatggaaattgggcttggaataactacttgtcacaccgtgcgttgata
agcgccgacaatgtccgcttgcaattgaagcgcactatggaacgcttcaatctcgatctc
atctctacagcgttcgaggataagcactattacactaacatacgtaaggctgttgtgtgc
gggtatttcatgcaggcagctcacagagaaggcgcgaaaggtaacacctaccttactatt
aaggaccagcaggtcgtcagtctccatccctccaccggcttagacacgtcgcccgaattt
gtcgtatataatgagttcgctcttaccaccaagaacttcctaagaaccgtctcggctgtg
aaaccggaatggctgctcagcttgggcggtgaatactttaacctgcgcaccttccaagac
ggcccgctcaagcgtgcgctgatgcatgctgctgaaaagagagccggcaagaaggacgac
aagaaaaagcgtggtggtaagtaa
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integrated database retrieval system
