Winogradskyella sp. J14-2: BWZ20_03260
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Entry
BWZ20_03260 CDS
T04714
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
wij
Winogradskyella sp. J14-2
Pathway
wij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BWZ20_03260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wij03019
]
BWZ20_03260
Enzymes [BR:
wij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BWZ20_03260
Messenger RNA biogenesis [BR:
wij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BWZ20_03260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
UTP25_NTPase-like
Cas3-like_C_2
Utp25_C
Ist1
PHB_acc_N
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
APY07377
LinkDB
All DBs
Position
692941..694296
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AA seq
451 aa
AA seq
DB search
MTFQDLNLNTPLYNAIEDLGFESPTPIQAEAFNVVASGKDMVGIAQTGTGKTFAYMLPIL
RHLKYSRQDNPRVLVLVPTRELVVQVVSEIEKMSKYINNRVLGVYGGTNINTQKQAVAQG
LDILVATPRRLYDLAVSRVLQLKSIQKLVIDEVDVMLDLGFRHQLMNIFDILPERRQNIM
FSATMTADVDELITDFFINPTKIQIAVSGTPLENIKQERYNVPNFYTKVNLLEHLLRDKD
DFSRVLIFVAYKKMADRLFDKLEELFPGQSCVIHSNKTQNYRLRSIEQFSEGEHRLLVAT
DVMARGLDIDDVTHVINFDTPDYPENYMHRIGRTGRAEKLGHALLFSTEKEQEARARIEA
LMQLKIETIEIPETVDISTELIEEERPQIRERNNPTKRTGEAIPGPAFHEKKEKNKKVNL
GGSYRREIAKKYKKPKTRGDKNFNKRNKKKR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
gtgacttttcaagatttaaatctaaatacccctttatacaatgctattgaagacttaggc
tttgagagtcctactccaatacaagccgaagcttttaatgttgttgcttctggaaaagat
atggtaggtatcgctcagacaggtactggcaaaacctttgcttatatgttacctattctg
cgtcatcttaaatactcaagacaagacaatccaagagtattggttttggtaccaacacgc
gaactcgttgtacaggttgtaagcgaaatagaaaaaatgtctaaatacataaataaccgt
gttttaggtgtttatggaggtactaatatcaatacgcaaaaacaagctgtagctcaaggc
ttggatatacttgtggccacaccaagacgtttatacgatcttgcagttagtagagtatta
caactcaaatctattcagaagttggtaatcgacgaggttgacgtgatgctagatttaggt
tttagacatcaactaatgaatatttttgacatcctgccagagcgaagacaaaacattatg
ttttctgctaccatgactgcagatgtagatgaattaattactgatttttttataaatcct
acaaaaattcaaattgctgtttcgggtactcctctggaaaatattaagcaagagcgctac
aatgttccaaatttttatactaaagttaatttgttagagcaccttttacgtgataaagat
gatttctcaagagtattaatctttgtggcttataaaaaaatggcagaccgtctttttgat
aagctagaggaactgttccctggtcaaagttgtgtcattcattctaataaaacacagaat
tacagacttcgtagtattgagcaatttagtgaaggtgagcacagattgttggtagctact
gatgttatggcaagagggttagatatcgatgacgtaacacatgttattaattttgatacg
ccagattatcctgaaaactacatgcatcgcataggtagaactggtcgtgctgagaagcta
ggccacgcattactattctctactgagaaagaacaagaagccagagcgcgtattgaagca
ttgatgcagctaaaaatagaaacgattgaaatccctgaaactgtggatatttcaaccgag
cttattgaagaagagcgtcctcaaataagagaacgtaacaacccaacaaaacgtactgga
gaggctatacctggacctgcttttcatgagaaaaaagagaaaaacaaaaaggtaaaccta
ggtggttcttacagaagagaaattgcaaaaaaatataagaaacctaagacgagaggtgat
aaaaattttaacaagcgcaataagaaaaaacgataa
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