Winogradskyella sp. J14-2: BWZ20_04085
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Entry
BWZ20_04085 CDS
T04714
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
wij
Winogradskyella sp. J14-2
Pathway
wij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BWZ20_04085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wij03019
]
BWZ20_04085
03400 DNA repair and recombination proteins [BR:
wij03400
]
BWZ20_04085
Enzymes [BR:
wij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BWZ20_04085
Messenger RNA biogenesis [BR:
wij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BWZ20_04085
DNA repair and recombination proteins [BR:
wij03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BWZ20_04085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
DNA_pol_lambd_f
GARS_N
Motif
Other DBs
NCBI-ProteinID:
APY07525
UniProt:
A0A1P8RUD3
LinkDB
All DBs
Position
complement(859373..861574)
Genome browser
AA seq
733 aa
AA seq
DB search
MSIAEIDLHSSLKKYFGFSEFKGLQEEVIKNVVKGNNTFVIMPTGGGKSLCYQLPALIKE
GTAIVVSPLIALMKNQVDAIRAVSENEGVAHVLNSSLNKTEVKRVKDDIINGITKLLYVA
PESLTKEEYVDFLKTQKISFMAVDEAHCISEWGHDFRPEYRNLRHIIKRIGDDIPIVGLT
ATATPKVQEDILKSLGMTDAVTFKASFNRPNLFYEVRPKTKNVDADIIRFIKQNEGKSGI
VYCLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRVKHQDMFLMEDTDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMSGKPVAEQ
EIGHALLQEVVAFAETSMSRRKFILHYFGEAFDNETGEGGDMDDNIRNPKKQVEAKDEVK
ILLDVVNKTNEKYKAKDLVQVITGKSNALISSHKTDTQPFFGVGEEKEDRFWIALIRQVI
VAGLLKKDIETYGVLRLSNSGKDFLKNPQSFMMAEDHTYDDEASDSIITNTKGGGAAADE
KLMTMLKDLRKRNAKKLGVPPFVIFQDPSLEDMALKYPVNIEELSNVHGVGESKAKKYGK
DFVNLIADYVEENDIMRPDDMIVKSTGSNSALKLYIIQNVDRKLPLDDIASAKGMDMPEF
IGEMESIVYSGTKLNINYWIDEILDEDQQEEIHDYFMDSQSDKISDAIEEFDGDYDDEEL
RLYRIKFISEVAN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgagtattgcagaaattgatttacactcctcgctaaaaaaatactttggtttttctgag
tttaaggggctacaagaagaagtaattaaaaatgtagtaaaaggtaataacacttttgtt
attatgccaactggtggtggcaaatcgctttgctatcagctgccagctctaattaaagaa
ggtacagcaatagtagtatctccacttatagctttaatgaaaaaccaggtagatgccata
cgggccgtgtctgaaaacgaaggtgttgcacacgttttaaactcgtcactaaacaaaacc
gaagttaaacgtgtaaaagatgatatcattaatggtattacaaaactactctatgtagcg
ccagagtcgcttaccaaagaagaatatgtagattttttgaaaactcaaaaaatctcattt
atggctgtggacgaagcacattgtattagcgaatggggacacgattttagaccagagtac
agaaatcttcgtcatataataaaacgcattggcgatgatattccgattgttggactcaca
gcaacggcaacacctaaagtacaggaagacattctgaaaagtttgggtatgacagatgcc
gttacttttaaagcatcctttaacaggccaaaccttttttacgaagtacgccctaaaacc
aaaaatgtagatgcagatatcattcgttttataaagcaaaacgaaggcaaatctggtatt
gtttactgtcttagtagaaaacgtgtagaagaactagcgcaagtgcttcaggttaatggt
attaaggcggtgccatatcatgcaggtctagacgctaaaaccagagtaaaacatcaagac
atgttcttaatggaagacactgatgtggtagtagcaaccattgcttttggcatgggtatt
gacaaaccagacgtgcgttttgtaatacatcacgatataccaaaaagtatagaaagttat
taccaagaaacgggtagagcagggcgcgatggaggtgaaggccactgtttagcattttat
gcctataaagatattgaaaagcttgagaagtttatgtctggtaagcctgtggcagagcaa
gaaattggtcatgccttattacaagaagttgttgcatttgccgagacatcgatgtctaga
agaaagtttatccttcattatttcggagaagcctttgataatgaaaccggtgaaggaggc
gatatggacgataacattcgcaatcccaaaaaacaggttgaagctaaagacgaagttaaa
atccttctagatgtcgtaaataagaccaatgaaaaatataaggctaaagatttagtacaa
gtgattactggcaaatctaacgccttaatttcatcgcacaaaacagatacacagccgttc
tttggtgtgggagaagagaaagaagatcgcttttggatcgcgcttataagacaggtcatt
gtggcaggacttttaaaaaaagatatagaaacttatggcgtattgcgcctaagtaattct
ggcaaggattttttaaagaatccgcaatcgtttatgatggcagaagaccacacgtacgat
gatgaagctagcgacagtataataaccaacaccaagggtggtggcgctgcagcagacgaa
aagttaatgactatgcttaaggacttacgaaagcgcaacgctaaaaaattaggtgtaccg
ccttttgttatttttcaggatccatcattagaagatatggcactaaaatatcctgtaaat
atagaagagttatccaatgtgcacggtgtgggcgaaagcaaagccaaaaagtacggtaag
gactttgtaaatcttatagcagactatgtagaagagaacgatatcatgagaccagatgat
atgattgtgaaatctacaggttctaattctgctcttaaactttatattatacaaaatgtt
gatagaaaattaccattagatgatattgcttcggcaaaaggcatggacatgccagagttt
atcggtgaaatggagtctatcgtctactctgggactaagctaaacatcaattattggata
gatgaaattttagatgaagaccagcaagaagaaattcatgactattttatggattcacaa
agcgataaaatttctgatgccatagaagaatttgatggtgattatgacgatgaagaattg
cgcctctatcgcattaagtttattagcgaagtagctaactaa
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