Winogradskyella sp. J14-2: BWZ20_04895
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Entry
BWZ20_04895 CDS
T04714
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
wij
Winogradskyella sp. J14-2
Pathway
wij03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
wij00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BWZ20_04895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wij03021
]
BWZ20_04895
03400 DNA repair and recombination proteins [BR:
wij03400
]
BWZ20_04895
Enzymes [BR:
wij01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BWZ20_04895
Transcription machinery [BR:
wij03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BWZ20_04895
DNA repair and recombination proteins [BR:
wij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BWZ20_04895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
APY07676
UniProt:
A0A1P8RUQ8
LinkDB
All DBs
Position
complement(1057013..1061314)
Genome browser
AA seq
1433 aa
AA seq
DB search
MARKQDKNTVQKFNKISIGLASPESVLAASRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGNAMNAEGEPVQKMDFLTEEEYLNILESLPQENQY
LEDTDPNKFIAKMGAECLIDLLARIDLDQLSYDLRHKANNETSKQRKTEALKRLQVVEAF
RESNENRENRPEWMIMKAIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGLPKNMAAELYKPFIIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPVTVPSQDMVLGLYYMTKLRKTDKEY
TVKGEGLTFYSPEEVTIAYNEKKVDLNAGIKVRTKDFNEEGELTTQIIETTVGRVLFNEK
VPEAAGYVNEVLTKKSLRDIIGKILKVTSVPETAEFLDEIKTLGYKFAFQGGLSFSLGDI
IIPEEKHSMIDAANKQVDGIMGNYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVYEEDCGTLRGIEVSALKKNE
EVVEKLEARIVGRTSLNDVYDPLTEELIIEAGGHIDDNIAKKIGDSAIETIEVRSPLTCE
AKQGICVKCYGRNLATGKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LTVKFDGIAEIDDLKTVKTKDGEGKEVDVVISRTSELKLTDAKTGIVLSTNNIPYGSHIF
VKPGAKVKKGDVICQWDPYNGVIISEFAGKVKYENIEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLLIEDKKGETIRSYNLPVGAHIMIDDGDKIEVGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKLGEVKKYLVKLSNQILV
QENDYVKAGMPLSDGSVTPNDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTIFLENQLVHKSDFIEENDKIFGMKVVEDAGDSENLKSGQIVTVRQL
RDENSILRREDKNLVTARDAQPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
NGKVDTLEGLKENVIVGHRIPAGTGVREYDNIIVGSKEEFDQMMKAKEEMNFN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaacaagataagaatacagtacagaaatttaacaaaatttctattggttta
gcgtctccagaatctgttttagcagcttctcgaggtgaagtattaaagccagaaactatc
aattatcgaacgcacaaacctgagcgtgatggtttgttctgtgagcgtatttttggtcct
gtaaaggattttgagtgtgcttgtggtaaatataaaagaatacgttataagggtatcgtt
tgtgaccgttgtggtgtagaagtaacagagaaaaaagtacgtagagatcgcgtaggacat
ataaatcttgtagtccctgtggcgcatatctggtacttccgctcattaccaaacaaaatt
ggttaccttcttggattaccatctaagaaattagatatgatcatttattatgagcgttat
gtggttatacaaccaggtaatgccatgaatgcagaaggtgaaccagtacaaaaaatggat
ttcttaacagaagaagaatatcttaatattttagaatcgcttccacaagaaaaccaatat
ttagaagacacagaccctaataaatttatcgctaagatgggtgctgagtgtcttatcgat
ttattagcaagaattgacctggatcagttatcatatgatttaagacataaagctaataac
gaaacatctaagcaacgtaagacagaagctttaaagcgccttcaagttgttgaagcattt
agagaatctaatgaaaatagagagaatagaccagagtggatgatcatgaaagctattcct
gtaattccaccagaattaagacctttagtgccattagacggtggtcgttttgcaacttca
gatttaaatgatttataccgtcgtgtaattatccgtaacaatcgtttgaagcgtttggtt
gagataaaagcaccagaagtgattctgcgtaacgagaaacgtatgttacaagaatctgta
gattcattatttgataacacacgtaagtcgtctgcagtaaaaacggattctaatagacca
ttaaaatcattatcagattcacttaaaggtaagcaaggacgtttccgtcaaaacttactt
ggtaagcgtgtagattattcagcacgttctgtaattgttgtaggaccagaattaaaatta
tttgaatgtggattgccaaagaacatggcagcagagctttacaagccttttattattaga
aaattaattgaaagaggtattgtaaaaacggtaaaatctgcaaagaaaattatagataga
aaagagcctgtagtttgggatatcttagagaatgttcttaaaggacatccagtattacta
aaccgtgctcctacacttcatagacttggtatccaagcattccagccaaagcttatcgaa
ggtaaagcgattcagttacacccgttagtctgtacggcatttaacgcggatttcgatggt
gatcagatggcagtgcatttacctttagggccagaagcaatcttagaagcgcaattatta
atgttggcttctcataatatattaaacccagcaaatggttcgcctgtaaccgtaccttct
caggatatggtacttggtctttactatatgaccaagttgcgtaagactgataaagaatac
actgttaaaggagaaggattaacattctactcaccagaagaagtaactattgcttacaac
gagaagaaggtagatcttaatgcaggtattaaagtaagaacaaaagattttaacgaagaa
ggtgaattaacaacgcaaatcattgagactactgttggtcgtgtactttttaatgaaaaa
gtgccagaagcagcaggttatgttaatgaagttttaacaaaaaagtctttaagggatatt
attggtaaaatcttaaaagttacttcagttcctgaaacggctgagttcctcgatgagata
aaaacattaggttacaagtttgctttccaaggtggattatcattcagtttaggtgatatt
attatcccagaagaaaagcactctatgattgatgctgccaacaagcaagttgatggtatt
atgggtaactataatatgggtctaatcactaataacgaacgttacaaccaagttattgat
atctggacatctaccaatgctgaattaactgaattatctatgaagcgtatccgtgaggat
caacaaggctttaactcagtatttatgatgttagactctggagctcgtggatctaaagaa
cagattcgtcagttaacaggtatgcgtggattaatggcaaagcctaagaaatctaacgca
ggtggtggagagattattgaaaaccctattctttctaactttaaggaaggtctttcaatt
cttgaatactttatatctactcacggtgctcgtaaaggtcttgcagatacagctcttaaa
actgccgatgctggttacttaacccgtcgtttagtggatgtttcacaagatgttatcgtt
tatgaagaagattgtggtacattaagaggtattgaagtttctgcacttaagaagaatgaa
gaagtcgtagaaaagttagaagctagaatcgttggtagaacatcattaaatgatgtttac
gatccattaactgaagaacttattatcgaagctggtgggcatattgatgataatatcgct
aaaaagattggagattcagccatagaaaccatagaagttcgctcaccactaacttgtgaa
gcgaagcaaggtatttgtgtaaagtgttacggacgtaacctagcaactggtaaaatggta
caacgaggcgaagctgtcggtgttgtggctgctcaatctattggtgagcctggtacacag
cttacgctgcgtacattccacgttggtggtattgcaggtaacatctcagaagaaaataag
ttaacagttaagtttgacggaattgctgaaatagatgatcttaaaaccgtgaaaactaag
gatggtgaaggaaaagaagtagatgtcgttatttccagaacttcagaattaaagctaaca
gatgctaaaacaggtattgttttaagtacaaataacattccttatggctctcatattttt
gttaagccaggtgctaaagtgaagaaaggtgatgttatctgtcagtgggatccatataac
ggtgtaattatttcagaatttgcaggtaaagtaaaatacgaaaacattgagcaaggcgtc
acctaccaggtagagattgatgaacaaacaggtttccaagaaaaggtaatttcagagtct
agaaacaagaagttgataccaacattattgattgaagataagaaaggggaaacgatccgt
tcatacaacttaccagttggtgctcacattatgattgacgatggagataagattgaagta
ggtaaaatcttagttaagatacctcgtaaatctgctaaagctggtgatattacaggtggt
cttccgcgtgtaactgagttattcgaagcgcgtaatccatctaacccagctgtagtaagt
gaaattgatggtgtggtgtcttttggtaagattaagcgaggtaaccgtgaaatcattatc
gagtctaaattaggtgaggtgaagaaatatttggttaagttgtctaaccagatccttgtt
caagaaaatgattacgtaaaagctggtatgccgctatctgatggttctgtaacaccaaac
gatatcctcaatatcaaagggccatctgctgtacaacagtacttagtaaacgaagtgcaa
gaagtataccgattacaaggtgtgaaaattaacgataaacactttgaagttgttgtaagg
cagatgatgcgtaaggtaagaatcatagattcaggagacactattttcttagaaaatcaa
ttagttcataaatcagattttattgaagaaaatgataagatttttgggatgaaagttgtt
gaagatgctggtgattccgagaatctaaaatcaggtcaaatcgtaactgtacgtcagcta
agagatgaaaactcaatattacgtagagaagataaaaaccttgtaacagctagagatgcg
caacctgcaactgctacaccaatattacaaggaatcaccagagcttcactacaaactaag
tcgtttatctctgctgcatctttccaagaaacaactaaggttcttaacgaagctgcagta
aatggtaaagttgatactttagaaggacttaaggaaaatgttattgtaggacacagaata
ccagctggtacaggtgttagagaatacgataatatcattgtaggttctaaagaagagttt
gaccagatgatgaaggctaaagaagaaatgaactttaactaa
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