Winogradskyella sp. J14-2: BWZ20_08120
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Entry
BWZ20_08120 CDS
T04714
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wij
Winogradskyella sp. J14-2
Pathway
wij03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BWZ20_08120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wij03400
]
BWZ20_08120
Enzymes [BR:
wij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BWZ20_08120
DNA repair and recombination proteins [BR:
wij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BWZ20_08120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
APY08266
UniProt:
A0A1P8RWG0
LinkDB
All DBs
Position
1769774..1773211
Genome browser
AA seq
1145 aa
AA seq
DB search
MSKTLISQTFSQTLQLQNLQNSIVQPFDCAQSKTAPKIHLKGLVGSSLSIVISEVFKSTE
KPFLLIFDDKEEAAYYLNDLEQLINDKDVLFYPGSYRRPYQIEETNNANVLLRAEVLNRI
NSRKKPCIIVTYPDALFEKVVTKKELEKNTLKIAVGNELSIDFVNEVLFEYKFKRVDFVT
EPGEFSVRGGIIDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSTERIKKASIIPNVAN
KQIAEQRESFLKYISNKTVLFAKNPSFIFSKIDEFFEKAEDTFKNLSTEVKHASPEELFC
NSELLKRQFLEYILVEFGASTYFSSVMSSEVETSQYSDLKRPLDYARGDSKTIFFNTKPQ
PSFNKQFNLLIEDLNENHANGITSYIACVSEQQAKRFHDIFDDAEQEEIHYKTVVLSLYQ
GFIDHDNKIAVYTDHQIFDRYHKFHLKNGYAKKQAITLKELTNLEVGDYVTHIDHGIGRF
GGLQKIDVEGKKQEAIKLVYGERDVLYLSIHSLHKITKFNGKDGKPPKVYKLGSKAWKNL
KQKTKSRVKEIAFNLIKLYAKRKLKKGFQYAPDSHMQLELEASFIYEDTPDQVSSTADIK
ADMESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAYQHYRTFKERL
KDFPVTVDYVNRFRTAKEKRETLENLEKGGLDIIIGTHQLANKTVKFKDLGLLIVDEEQK
FGVAVKEKLKTIKENVDVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESHVIRF
NEETIRDAVSYEIQRGGQVFFIHNRIENIKEVAGMIQRLVPDAKIAIGHGQLDGKKLEQL
MLAFMNGEFDVLVSTTIVESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCY
FITPEYSAMTTDARKRIQALEQFTELGSGFNIAMKDLEIRGAGDLLGGEQSGFINDIGFD
TYQKILNEAIEELKESEFSDLYKDDGKPKQYVKDITIDTDFELLFPDDYVNSITERLNLY
TKLNEIKTEEELQKFESEIIDRFGELPTQVQDLFDSVRLKWIATKMGLEKVIMKKGKLIG
YFIQDQQSKFYQSNDFSRVLQFVQMNASKCKMKEKQTRNGLRLLITFEKINSVSSALHAL
QPIMA
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaaaacccttatctcgcaaaccttttcacagactttgcaactgcaaaatctgcag
aattctattgtccaacccttcgactgtgctcagagcaagactgctcctaaaatccaccta
aaaggtctcgtaggatcttctttgtcaattgttatttcagaggtttttaagtctactgaa
aaaccgtttttactcatcttcgatgataaagaagaagctgcctattacctcaacgattta
gaacagcttatcaatgacaaagatgttttattctatcctggcagttatagaagaccatac
caaatagaggaaaccaataatgccaatgtacttttaagagcagaggtgcttaaccgcatc
aattctcgcaaaaagccatgtattattgttacctatcctgatgcgctttttgaaaaagta
gtaaccaaaaaagaattagaaaaaaacactttaaagattgctgtaggtaatgaattgagt
atcgattttgtaaacgaagttctttttgaatataaatttaaacgtgtagattttgttaca
gaacctggcgagttttctgtaagaggaggtattattgatgtcttttcattttcgcatgac
gaaccttaccgcattgagttttttggtgatgaagttgatagtattagaacctttgatgta
gaaacgcaactttctacagagcgcattaaaaaagcaagcatcattccaaatgtcgctaac
aagcagattgcagagcagcgagaaagctttttaaaatatatttctaacaagacggtttta
tttgctaaaaacccatcatttattttttcaaaaattgatgagttttttgaaaaggcagaa
gacactttcaaaaacctatcgaccgaagtaaaacatgcctcacccgaagaattattctgt
aattcagaattactcaaacgacaatttttagagtatatcttggttgagtttggtgcttcg
acttattttagttctgtcatgtcgagcgaagtcgagacatctcagtattcggatttaaaa
agacctctcgactacgctcgaggtgacagcaaaactatatttttcaacaccaagcctcaa
ccatcatttaacaaacagtttaatctattaattgaagacttaaatgaaaatcatgctaac
ggtattaccagttatatagcatgtgtaagtgagcagcaggccaaacgttttcatgacatt
tttgatgatgccgaacaagaagaaattcattataaaacagtcgtattatcgctttatcaa
ggttttatagatcacgacaataaaattgcggtttacacagaccatcagatttttgatcgt
tatcataaatttcatctaaaaaacggttacgccaaaaagcaagccattacgcttaaggag
ctcactaacttagaggttggagattatgttacgcacatagaccacggcattggaagattt
ggtggacttcaaaaaatagatgtagaaggcaaaaagcaagaggctataaaattggtttat
ggagagcgtgatgtactgtatttaagcatccattctttacataaaatcaccaagtttaat
ggtaaagacggtaaaccacctaaggtctataaactaggaagtaaagcctggaaaaatctt
aagcaaaaaactaaatctcgtgttaaggaaatagcctttaacctcattaaactctacgcc
aaacgtaagttaaagaagggctttcagtatgcaccagacagtcatatgcagttagagtta
gaagcttcatttatttatgaagatactccagaccaagtgtcgtctactgcagacataaaa
gcagacatggaaagcgaacgaccaatggatcgtttagtttgtggcgatgttggttttggt
aaaactgaagttgccataagagctgcttttaaagcggtagataatggtaaacaagttgcg
gttttagtacctacaactatattagcttatcaacattacagaacatttaaagaacgttta
aaagattttcctgtaacggtagattatgtcaatcgttttagaacagctaaggaaaaacga
gaaactttagaaaatctagaaaaaggtggtttagatatcattattggtacgcatcaactt
gctaataaaactgtaaaatttaaggatttaggactgctcatcgttgacgaagagcaaaag
tttggtgttgcagtaaaggaaaagttaaagactattaaagagaatgttgatgtactcaca
cttacagcaacacctattccgcgtacattacagtttagtttaatggctgcaagagatcta
tcggttattacaactccacctccaaaccgttatcctatagaaagtcatgttattcgtttt
aatgaagaaaccataagagatgctgtgagttacgagattcaacgtggtggccaagtgttt
tttattcataatcgtatagagaatattaaggaagtggctggtatgattcaacgtttggtg
ccagatgccaagattgcaattggtcatggtcagctcgatggaaaaaagctagaacaattg
atgctggcttttatgaatggcgaatttgatgttttggtaagtacaaccattgtagaaagt
ggtctagatgttcctaatgctaatacgatttttatcaacaatgctaataattttggactg
agtgacttgcaccaaatgcgcggtcgtgtaggccgtagcaacaaaaaagcattctgctat
ttcataacaccagagtattctgccatgactacagatgccagaaagcgtatacaagcactc
gaacaatttaccgagcttggtagcggctttaatattgccatgaaggatttagaaatacgt
ggtgcaggagatttacttggtggtgagcaaagtggttttatcaatgatattgggtttgat
acgtaccaaaaaatcttaaatgaagccattgaagagcttaaagaatctgaattttcggac
ttatacaaagatgacggcaagcctaagcaatacgtaaaggatattaccatagataccgat
tttgagttactattcccagacgactacgttaacagtattacagaacgcttaaatctgtac
acgaagctcaatgagataaaaacagaagaagaattacaaaaatttgagtctgaaatcatt
gatcgttttggtgaattgccaacgcaagttcaagatttgtttgatagcgttcgcttaaaa
tggattgctacaaagatgggacttgaaaaagtcattatgaaaaaaggaaaacttatcggt
tactttattcaagatcagcaaagtaaattttatcaaagtaatgactttagtagagtttta
cagtttgtacaaatgaatgcctcaaaatgcaaaatgaaagaaaaacaaaccagaaatggt
ttaagattattaattacttttgagaagataaactcggtttcttctgcattacatgcattg
caacccattatggcttaa
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