Winogradskyella sp. J14-2: BWZ20_14235
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Entry
BWZ20_14235 CDS
T04714
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
wij
Winogradskyella sp. J14-2
Pathway
wij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BWZ20_14235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wij03019
]
BWZ20_14235
03009 Ribosome biogenesis [BR:
wij03009
]
BWZ20_14235
Enzymes [BR:
wij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BWZ20_14235
Messenger RNA biogenesis [BR:
wij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BWZ20_14235
Ribosome biogenesis [BR:
wij03009
]
Prokaryotic type
rRNA helicases
BWZ20_14235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
APY09393
UniProt:
A0A1P8RZR2
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All DBs
Position
complement(3158779..3160572)
Genome browser
AA seq
597 aa
AA seq
DB search
MSTFQNLGLNEDLLNGISDLGFETPSEIQQKAIPVLLAEERDLVALAQTGTGKTAAFGFP
MLQKIDINSRTTQGLILSPTRELCLQITNELKLYGKYCKGLNVVAIYGGASVTDQAKQIK
KGAQIVVATPGRMKDMISRNLVDISKIQYSVLDEADEMLNMGFYDDITDILSHTPMDKST
WLFSATMPKEVAAIAKKFMSDPIEITVGNKNESTSNVSHEYYLVNGRDRYLALKRLADAN
PDIFSVIFCRTKRDTQKIAEKLIEDGYSAGALHGDLSQNQRDLVMKSFRNKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGVSMVIVAKSEIRKIKSIERI
IKRQFEKKDIPSGMEICEVQLMNLANKIHNTEVNHEIDKYLDSINELFEDTEKDELIKKF
FSVEFTRFFNYYKNSKDLSVSESGRSSDDGGRASGTDTRYFINVGRKDGYDWMSLKDFLK
EVLELGKDDVFKVDVKDSFSFFNTEKENEEKVLAFFTDFKYNGRFVNVEVSENKGRSGGG
RRDRNRGGKRKGNDKPRGDRRSRRSNDSGRQDGRRSEKSSKKGRRSASDRPRRSRRK
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagtacattccaaaaccttggtcttaatgaagaccttcttaatggtatttcagattta
ggatttgaaacaccaagtgaaatccaacaaaaagcaattccagtattattagcagaagag
cgcgacctagtagcgcttgcacaaactggcacaggaaaaaccgcagcatttggttttccg
atgcttcaaaaaattgatatcaatagcagaaccacgcaagggcttatcctctcacctacc
agagaattgtgtttacaaatcaccaacgagttaaaattgtatggtaaatactgtaaaggc
ctaaacgttgttgccatttatggtggtgcaagcgtaacagaccaagccaagcaaattaaa
aaaggtgcacaaattgttgttgctactccgggtcgtatgaaagatatgattagccgcaat
ttggtagatatttctaaaatacaatacagtgttttagatgaagccgacgagatgctaaac
atgggcttttatgacgatattacagatatcttgtcacacacaccaatggataaaagtacg
tggctattttcagcaacaatgccaaaagaagtggctgcaattgcaaaaaagtttatgtcc
gacccaattgaaattaccgtgggtaacaaaaacgaaagtacaagtaatgtttcccatgag
tattacttggttaatggtcgtgatcgttatttggcgttaaagcgtttggcagatgctaat
cctgatattttctcggtaattttctgtagaacaaaacgcgatacacaaaaaattgccgaa
aagcttattgaagacggttacagtgctggtgcattacatggagatttaagccaaaatcaa
cgtgacttagtcatgaagtcttttagaaacaagcaaattcaaatgctggtggcaacggac
gttgctgcacgtggtattgatgtagatgatataactcacgttatcaattaccaattacca
gacgaaatagaaacttacacacaccgttctggccgtactggtagagctggtaaaactggt
gtttctatggttatagttgctaaaagcgaaatacgaaaaattaaaagtattgagcgcatt
attaaaagacagtttgaaaagaaagatatcccatctggtatggaaatctgcgaggtgcaa
ttaatgaacttggccaataaaattcataacacagaagttaatcacgagattgataaatac
ttagatagcattaacgaactgtttgaagacactgaaaaagatgaattgattaaaaagttc
ttttcggttgagtttacacgtttctttaactactataaaaactctaaagacctttcagtt
tcagaatctggtcgtagtagtgatgatggcggaagagcatctggaacagacacgcgttac
tttattaatgttggtcgtaaggatggttacgactggatgtctttaaaggatttcttaaaa
gaagttttagagcttggtaaagacgatgtctttaaagttgatgtaaaggatagtttttca
tttttcaataccgaaaaagaaaacgaagagaaagtcttagcattttttacagactttaag
tataatggtcgctttgttaatgtagaggttagcgaaaataaaggacgcagtggtggcgga
agacgcgacagaaatcgtggcggaaaacgaaaaggtaatgacaaacctcgtggtgataga
cgctctagacgcagtaatgattctggaagacaagatggaagacgttctgaaaaatcatct
aaaaaagggagacgttctgcgtctgacagaccgcgcagatctcgaagaaaataa
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