Winogradskyella sp. PG-2: WPG_1231
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Entry
WPG_1231 CDS
T03603
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
win
Winogradskyella sp. PG-2
Pathway
win03410
Base excision repair
win03430
Mismatch repair
win03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
win00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
WPG_1231
03430 Mismatch repair
WPG_1231
03440 Homologous recombination
WPG_1231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
win03400
]
WPG_1231
DNA repair and recombination proteins [BR:
win03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
WPG_1231
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
WPG_1231
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WPG_1231
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAO75461
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Position
complement(1347377..1349068)
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AA seq
563 aa
AA seq
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MHWTLKPKPDPLKVEALKKELQVDDIVATLLLQRGITTYESAKTFFRPSFDDLHDPFLMK
DMDKAVVRIEKAIVNGENVLVYGDYDVDGTTSVALMSSYLKTRLESIATYIPDRYDEGYG
ISYKGIDFANDNDFTLIIALDCGVKAIDKIAYAQEKGIDFIICDHHRPGDQLPDAVAVLD
PKRGDCEYPFKELCGCGVGFKLITALASNQGQSVEDLTEYLDLVATAIGADIVPIVEENR
ALAYFGLQVINTKPRPGMKAIIAEVKKDELTITDVVFIIAPRINAAGRMKHGNHAVTLLT
ETDFNLAAAYAVDIDQFNTDRRETDKRITEEALIQIEENNEQKGFTTVVYREDWHKGVIG
IVASRLTETYFRPTLVFTKSGDKLAASARSVKGFDVYNALEACSEYIEQFGGHKYAAGLT
LLPENYDAFKAKFENIVKKSIDQKLLIPEIKVDLKIELGQINDKLMRILKQFAPFGPGNM
SPTFMSQGVKDTGWGKCVGEDDKHIRLTATQSFNDKIACIGFGLGDKIDVIKSKRPFSIT
YSIDENHWNGKISLQLKLKDIKE
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcactggacgttaaagccaaaaccagaccctttaaaagttgaagcactaaaaaaagaa
cttcaagttgatgatattgttgcgactttattgttgcaacgtggtataacaacttacgaa
tctgctaaaacattttttagaccgagttttgacgatttgcacgacccattcttaatgaaa
gatatggataaggctgttgtccgaattgaaaaggcgattgttaacggtgaaaatgttttg
gtttatggagattatgatgtggacggtacaacttctgtagctttgatgtcttcgtattta
aaaacgagactcgagtctatcgcaacttatattccagatcgttatgatgaaggttatgga
atttcttataaaggtattgactttgcaaatgacaatgattttacattaattatagcttta
gattgtggtgttaaggctattgataaaatagcttatgcccaggaaaaagggattgatttt
attatttgtgatcatcatagaccaggagatcaacttccggatgcagttgctgttttagac
ccaaaacgaggagattgcgaatatccatttaaagaattatgtggttgtggagttggtttt
aaactcattactgctttagcttctaaccaaggacaatcggttgaggatttgaccgagtac
ctagatttagttgctactgcaattggcgctgatattgttcctattgtagaggaaaatagg
gctttagcttattttggtcttcaggtgattaatactaaaccgagacctggaatgaaagct
attatagctgaggtaaaaaaagatgagctcactattactgatgtagtattcattatcgct
ccaagaataaatgcagccggtagaatgaagcatggaaatcatgccgtgacattgcttaca
gaaaccgattttaatttagctgcagcctatgctgtagatattgatcagtttaatacagac
cgtcgcgaaactgataagcgaattactgaagaagctttaattcaaatagaagaaaacaac
gaacagaaaggctttacaacagttgtttacagagaagattggcacaaaggtgttattgga
attgtagcatcacgattaacagaaacttactttagaccaactttagtattcactaaaagt
ggagataaacttgcagcttcagcgagatcagttaagggttttgatgtctataatgccttg
gaggcatgctcagaatatattgaacaattcggtggacacaaatatgccgcaggattaaca
ttacttccagaaaattatgacgcttttaaagcaaagtttgaaaatattgtcaaaaaaagt
atagaccaaaaattattaataccagaaataaaagttgatttaaaaattgaattaggtcaa
atcaatgataaactaatgcgaatcttaaaacagtttgcaccatttggaccaggtaatatg
tctccaacttttatgtctcaaggggtaaaagatacaggttggggaaaatgtgttggtgaa
gatgataaacatatacgacttacagcgacacaatcctttaatgataaaattgcttgcatt
ggttttggattgggtgataaaatagatgttatcaaaagtaaaaggcctttcagtattacc
tattcgattgatgaaaaccattggaacggtaaaataagtttacaactaaaattgaaagac
atcaaagaataa
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