Winogradskyella sp. PG-2: WPG_1985
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Entry
WPG_1985 CDS
T03603
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
win
Winogradskyella sp. PG-2
Pathway
win03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
win00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WPG_1985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
win03019
]
WPG_1985
03016 Transfer RNA biogenesis [BR:
win03016
]
WPG_1985
Enzymes [BR:
win01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
WPG_1985
Messenger RNA biogenesis [BR:
win03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WPG_1985
Transfer RNA biogenesis [BR:
win03016
]
Prokaryotic type
tRNA degradation factors
WPG_1985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
BAO76215
LinkDB
All DBs
Position
complement(2196561..2198837)
Genome browser
AA seq
758 aa
AA seq
DB search
MIPKTYKEVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDVNFLPL
TVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMS
HDPEVMPDAMAGLAASAAIQLSDFPFECPISEARVGRINGEFIINPTFAQLEESDIDMMI
GASADSVMMVEGEMDEISEEEMADAIKFAHEAIKVQCAAQVRLAEAFGKKETREYEPERE
DEDLAKKIHDMAYDKVYAIAKGGSSKKERGMAFSEIKEEIKATFSEEELEDYGGLVSKYY
SKAEKAAIRDLTLDEGLRLDGRKTTDIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLG
TSRDANQIDMPSQEGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRALKGMVPD
DCPYTVRVVSEVLESNGSSSMATVCAGTMAMMDAGVQMTKPVSGIAMGLISDADSGKYAV
LSDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALQQARDGRLHILEKL
TDTIATPNAEVKDHAPTMITRRIPNEFIGALIGPGGKVIQEMQKETETTIVINEDPVTEE
GIVEILGVGKSGIDAVMAKIDAILFKPEVGSVYEVKVIKMLDFGAVVEYMEAPGNEVLLH
VSELAWERTENVSDVVNMGDVFDVKYFGIDKRTRKEKVSRKAILPKPEGYVERPARDNNR
GRDNRGRDNRGRDNRGRDNRGRDNRRDDKKPREDKKED
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaagacttacaaagaggtcattgacctaggtgatggtagagaaatttctatc
gaaaccggaaaattagcaaagcaggctcatggttctgttgttgtgcaatcagggaaatgt
atgttattatgtactgttgtttccaattacgaacaaaaagatgttaacttcctaccatta
acagtagattacagagaaaaatttgcagctgcaggacgttatccaggtggtttctttaaa
agagaagctagaccaagtgatggcgaagtattaacaatgcgtttagtggacagagtttta
cgtccattattcccaaaagattaccactctgaaactcaggtaatgattcagttaatgtct
catgatccagaagttatgccagatgccatggcaggattagcagcttctgctgctattcag
ttatcagattttccgtttgaatgtccaatttctgaagctagagtaggtcgtattaacgga
gaattcattatcaatccaacatttgctcaattagaagaatctgacatcgatatgatgatt
ggagcttctgctgattctgtgatgatggttgaaggcgaaatggatgagatttctgaagaa
gaaatggcagatgcaattaagtttgctcacgaggctattaaagtacaatgtgctgctcag
gtaagattagctgaagcattcggtaagaaagaaactcgtgaatatgaaccagaacgtgaa
gatgaagatttagctaaaaagattcatgatatggcatatgataaagtctatgctatagct
aaaggtggttcttcaaaaaaagaacgcggaatggcgttttctgaaatcaaagaagaaatc
aaagcaacattttctgaagaagaacttgaagattatggtggtttagtttctaaatattat
tctaaagccgaaaaagccgcgattagagatttaaccttagacgaaggcttacgtttagat
ggccgtaaaactacagatattagacctatttggtgtgaggtagattatttaccatcaaca
catggttcttcagtttttacacgaggtgaaactcaagcattagctactgttactttagga
acatctagagatgcaaaccaaatagatatgccatctcaagaaggtgaagagcgtttctat
ttacattataacttcccacctttttgtacaggagaagctagaccaatccgaggaacatct
cgtagagaggtaggtcatggtaacctagctcaacgtgcattaaaaggtatggtgccagat
gattgtccttacacagtaagagtcgtgtctgaagtattagaatctaacggttcgtcttct
atggcaactgtttgtgctggcacaatggctatgatggatgctggtgtacaaatgacgaag
cctgtttctggtattgcaatgggattaatctcagacgctgattctggaaaatatgctgta
ttatctgatattttaggtgatgaagatcacttaggagatatggattttaaagttactggt
actgcagatggtattacggcttgtcaaatggatattaaagtaaaaggtttatcgtacgag
attttagtgaatgcactacaacaagcacgtgatggtcgtttacatatcttagaaaaatta
acggacacaattgctactcctaacgcagaagttaaagatcatgcaccaacaatgattacg
agacgtatacctaatgaatttattggagccttaattgggcctggtggaaaagtaatacaa
gaaatgcaaaaagaaactgagacaactatcgttatcaacgaagatccagtgactgaagaa
ggtattgttgaaattttaggtgtaggtaaaagtggtattgatgctgttatggcaaaaatt
gatgctattttatttaaacccgaagttggcagcgtttacgaagtgaaagtgattaaaatg
ttagattttggagctgttgttgaatatatggaagcgccaggaaacgaagtattattacac
gtatctgaattagcttgggaacgtacagaaaatgtatctgatgtagtaaacatgggagat
gtatttgatgttaagtactttggtatagacaaacgtacacgtaaagaaaaggtatctcgg
aaggctattttacctaaaccagaaggttatgtagagcgtccagcaagagataacaatcgt
ggaagagataatagaggtagagacaatcgtggtcgtgataatcgtggaagagataatcgt
ggaagagataatcgtagagacgataaaaaaccaagggaagataaaaaggaagattaa
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