Weissella jogaejeotgali: FOL01_0104
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Entry
FOL01_0104 CDS
T04632
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wjo
Weissella jogaejeotgali
Pathway
wjo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOL01_0104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wjo03400
]
FOL01_0104
Enzymes [BR:
wjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOL01_0104
DNA repair and recombination proteins [BR:
wjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOL01_0104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_30
AAA_22
AAA_7
RecG_dom3_C
DUF2608
Hydrolase_6
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
APS40963
UniProt:
A0A1L6R8X0
LinkDB
All DBs
Position
110399..113899
Genome browser
AA seq
1166 aa
AA seq
DB search
MRLTELLQQDKALQQLATGLTKGGRHLMTGISGTARTVYLAALQRQTQQPMVIVSDSQFH
ADQLAEDLQALLGDEHVAVFPAEESLAAELAVTSLDTRLARVNALHLLLTDPQAVIVTGI
AGAQRYLPPVKDFQQAQLTLDFDHEYDLKDLETQLHQMGYHRNTTVEQPGEFAIRGSIVD
VYPLNADYPVRLDFFDTELDSMRSFDAENQRSIENMTSLTILPATDLVISDTGRQAAKTR
LELAMTKQRDQLAGADKRHLTEAITSLLTTLADGQLLPEIRAYLRALYPDAASLFDYLPA
NGVAVFDDYPRAIENAAQMRLDDTNWWTEKLDKQQVLTEADFGWSLTDQARDVQQASLIF
SPLQRGIGQLRQTSLTNVTLRPTQQFFGQMPLLKGEVERWQKQNMTVIFLTNSNDRQVKL
VQTLNDFGIKVNQVAVDELTTGRTQLATLPLSAGFELPMQKLVVLTEKELFQQVRKRAPK
RQTLSNAERIKSYNELKPGDYVVHVNHGIGIYEGMQTIENRGVKQDYITIAYQKGDKLFI
PVTQLDLVQKYVGAAEKAPKINKMGGTEWQRAKAKVAKKVEDIADELLALYAEREIKQGY
AFAPDDEAMRQFEDAFPYPETPDQIRSVKEIKADMEKSRPMDRLLVGDVGFGKTEVAMRA
AFKAAHEGKQVAMLVPTTILAQQHYDSFLSRFEGTDLQIAWMSRFQTKKQMKELKDGLKN
HTIDIVIGTHSLLAKDVSFSDLGLLIVDEEQRFGVKHKERLKSLQTNVDVLTLTATPIPR
TLNMAMVAVRDLSVIETPPANRYPIQTYVMEQNGRVIANAIEREMARGGQTFYLHNRVAD
IEKVAGMIQSLVPEAQVAYIHGQMTETQMEGILVDFINGEYDVLVTTTIIETGVDIPNAN
TLFVENADYMGLAQLYQLRGRVGRSNNVAYAYFTYPGTRSLNEESEKRLTAIRDFTELGS
GFKIAMRDLSIRGAGDLLGQSQHGFINAVGYDLYTQMLQEAVAAKQGKQTKRFNSELDLQ
VEAYLPTNYVADGPQKIDLYQRIRKATKEEQFAEITDDLVDRFGDIPASANRLLMVSRLK
AVADQVGVAQIKRTINQPMIVTISFDKQAQVTREQVQQAMATTKTRGQIKVNDPVLFAMA
IQPKQTDDEWLQSLMQFLTALLPKKD
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaactgaacttttacaacaggataaagctttgcagcaattagccactgggctg
actaagggtggtcgccatttgatgacgggtatctctgggactgctcggacagtctattta
gcagcgttacaacgacaaacacagcaaccaatggtgattgtgtcagatagtcagtttcat
gccgaccaattagcagaagacttacaagcattgttgggtgatgagcacgttgcggttttt
cctgctgaggaaagtttagcagctgaactagccgtgacatcgctagatacacgtttagca
cgagttaatgccttgcatctattgctgacagatccacaggcggtaattgtcactggtatt
gctggtgcgcaacgttacttaccaccagtcaaagatttccaacaagcgcagctaaccctt
gattttgatcatgaatatgatttaaaagatttggaaacgcaactacatcaaatgggatat
catcggaatacgacggtggaacaacctggtgagtttgccattcgtggctcgattgttgat
gtgtatccgctaaatgctgattatccggtcagattggatttttttgatacagaattggat
tcgatgcgttcgtttgatgctgaaaaccaacgtagtattgaaaatatgacgtcgttgact
attttgccagcaacggatttggttatcagtgatactggtcggcaagcggcaaagactcgt
ttagaattagcaatgacaaagcaacgtgaccaattggcaggtgcggataagcggcatttg
actgaagccatcacgtccttattgaccacgctagcagatggacagcttttgccagagata
cgagcatacctacgtgcgctgtaccctgatgcggctagtttatttgattatttgccagca
aatggtgtcgcggtctttgatgattatccccgtgccattgaaaatgcagcgcagatgcgc
ttagatgatacgaactggtggactgaaaagcttgataagcaacaagtactgactgaagca
gattttggttggtcgctaactgatcaagcacgtgatgtccaacaagccagtttgattttt
tcaccactgcaacgaggtattggtcaattacggcaaactagtttaactaacgtcacgcta
cgtccaacacaacaattctttggtcaaatgcctttacttaaaggcgaggtggaacgttgg
caaaagcaaaacatgacggtgatctttttaactaattcaaatgaccgacaagtcaagctg
gttcagaccttgaatgattttggcattaaggtcaatcaagtggcggttgatgagttgact
acaggtcggacgcaattagccactttgccattgagtgccggttttgagttaccaatgcaa
aagttggttgtgttaacggaaaaagaactgttccaacaggttcgtaaacgtgcaccaaag
cgacagacactgtcgaatgcggaacgtatcaaaagctataatgagttgaaacctggtgat
tatgttgtccacgtcaatcatggtattggtatctatgagggcatgcagacaattgaaaac
cgtggtgtgaagcaagattatattacgattgcctatcaaaaaggtgataagctgtttatc
ccggtgacccaactggatttggtacaaaagtatgtcggtgcagccgaaaaagcgcctaaa
attaataaaatgggcggtactgagtggcaacgggcaaaggctaaagtcgctaaaaaggtt
gaggatattgcggatgaactcctagctttatatgcggagcgcgaaattaaacaaggttat
gcatttgccccagatgatgaggcgatgcgccagtttgaagatgcctttccttatcctgaa
acaccggatcaaatccgatcagtcaaagaaattaaggctgatatggaaaaatcacgacca
atggaccgcttgctggttggtgatgttggctttggtaaaactgaagttgccatgcgcgca
gcctttaaagcagcccatgagggtaagcaagtggccatgctagtaccgacgactattttg
gcccagcaacattacgattctttcctgagtcgttttgaaggaacggatttgcaaattgct
tggatgtcacgtttccaaaccaaaaaacaaatgaaagaactcaaggatggattgaagaac
catacaatcgatattgtgattgggacccatagtttattggctaaagatgtgtcgtttagt
gatctgggattactcattgtggatgaggaacaacgttttggtgtaaagcataaggaacgt
ttgaagagtctgcaaacgaacgttgacgtcttaacactgaccgcaacaccaattccacgt
acattgaatatggcgatggtcgccgtacgtgacttatcggtcattgaaacgccgccggca
aatcgttatcccatccagacctatgtgatggagcaaaatggtcgcgtcattgccaacgct
attgaacgagagatggcacgtggtggccaaactttttatctgcataatcgtgtggcagat
attgaaaaggtagcggggatgattcaaagcttagttcctgaagcacaagtggcttacatc
catggtcaaatgactgaaacccaaatggaaggtattttagttgactttattaatggtgag
tatgacgtcttagtcacaacaacgattattgagactggtgtggatattccaaatgccaat
acgttgtttgtggaaaacgcagactacatgggattggcacagttgtatcagttgcgtgga
cgcgttggtcgttctaataatgtggcctatgcctatttcacttatcccggaacgcgttcg
cttaatgaagaaagtgagaagcgtttaactgctattcgtgactttactgagttgggttct
ggctttaaaatcgccatgcgtgatttgtctatacgtggtgcaggtgatttgcttggtcaa
tcgcaacacggattcattaatgcagtcgggtatgatttgtacacgcaaatgttgcaagaa
gccgtcgctgctaagcaaggtaagcaaaccaaacgtttcaattcagagttggatttgcag
gttgaagcctatttgccaacgaattatgttgctgatggtccgcaaaaaattgatttgtat
cagcgtattcgtaaagcaacgaaggaggaacagtttgctgaaattacagatgacttggtc
gaccgcttcggtgatataccagcgtctgccaatcgtctgttaatggtttctcgattaaag
gcggttgccgatcaagtcggagttgcgcaaattaaacgtacgatcaatcaaccaatgatt
gtgacgataagttttgataagcaagctcaggtaactcgtgagcaagtccaacaagctatg
gccacaacaaaaacacgtggtcagattaaagtgaacgatccagtgttgtttgcaatggct
attcagccaaagcaaacggacgatgaatggttacaaagcttgatgcagtttttgacagca
ttattgccaaaaaaggattag
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