Weissella jogaejeotgali: FOL01_0522
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Entry
FOL01_0522 CDS
T04632
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
wjo
Weissella jogaejeotgali
Pathway
wjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOL01_0522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wjo03019
]
FOL01_0522
03016 Transfer RNA biogenesis [BR:
wjo03016
]
FOL01_0522
Enzymes [BR:
wjo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FOL01_0522
Messenger RNA biogenesis [BR:
wjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FOL01_0522
Transfer RNA biogenesis [BR:
wjo03016
]
Prokaryotic type
tRNA degradation factors
FOL01_0522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
CSD
RNase_II_C_S1
EXOSC1
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
APS41381
UniProt:
A0A1L6RA07
LinkDB
All DBs
Position
570043..572397
Genome browser
AA seq
784 aa
AA seq
DB search
MDLQNLQDQLFGFLKGNPTQAYPAQTLTDGLRLNDANAFKSVVQALAALERAGKVKVNDA
GAFQYNADHEGVIGTFKSNDKGFGFVHYDEKAPDVFVNPDNTAFATQGDEVRVKLLNKGD
DKRGPEGKIEEIITRGREHVVGEFSLGSAYKGYVGSIRLTDKKFSSFEFLVKEGGLVATD
GEVVMASIATYPSAEMPKHFTGVITEKIGYKDDPGVDILEIVYNHDVPHVFPKDAMKQAE
AIPDEVLDSECEGREDITDQPLVTIDSIESKDLDDAVVVWKLPNGNFHLGVHIADVSHYA
VEGTPLDEEAYNRGTSVYLTDRVIPMLPRKISNGIASLNPGVDRLAMSAEMEFTPKGNLV
SHRLHTSVMRSHARMTYKAVNAILDGDEETRSEYAELVPMFEEMAELHDILSAKRTARGA
IEFDAPEAKIIVDEEGKPTDIELRERGLSERIIESFMLAANETVAMHFDLAKVPFLYRIH
EAPDADRVQSFVDFVKALGAPVKLDPENVKSTDLQAIHNFFVDRPEEQMVSTMMLRTMKQ
AKYSNDPLGHFGIGAEYYTHFTSPIRRYPDLTVHRLIKWYEKNGLGEEAQAKYADKLAQI
GEDTSVKERRAVDTERDTDAMKKAEFMMDKVGQEFDGVVNGVLKFGMFISLENTVEGLIH
VSNFTDDQYVYDEAHMALIGRRLHHIYQIGQPVKVRVVRVDKEQASIDFVLVDPDEAPVT
DIKVPDEHRGAFGKNRGGRRQHDKRNHSSKGNKTHNDGKAFGAYQNKRKPDSKHQGTNRK
GRHK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggatttacaaaatttacaagaccaattatttggctttttgaaaggaaatccgacccaa
gcgtatccagcacaaacgttaacagatgggttgcgattaaatgatgcgaatgctttcaaa
tcagttgtacaagctttagcagctttggaacgtgctggcaaagttaaagttaatgatgca
ggtgcatttcaatataatgcagatcatgaaggagtcattggtacatttaaatctaatgac
aaagggttcggatttgttcattatgatgaaaaagcaccggatgtgtttgttaacccagat
aatacggcttttgcaacacaaggtgatgaagtgcgtgtcaagttgcttaataagggcgac
gataagcgtggtcctgaaggtaagatcgaagaaattattacacgtggccgcgaacatgtt
gttggcgaattctccttaggtagtgcttacaaaggctatgtcggtagtatacgtttgact
gataagaagttttcttcctttgagtttttagttaaagaggggggcttggttgcgacagat
ggtgaagtggttatggcttcaatcgcaacgtatccttctgcggaaatgcccaaacacttt
acaggtgtaattacagagaaaattggttataaggatgatccaggtgttgatatcttggag
attgtttataatcatgatgtgccacacgtattccctaaagatgcgatgaaacaagccgag
gccattcctgatgaggtattggatagtgaatgtgagggtcgtgaagatattactgatcaa
ccattagtaaccattgattctattgagtcaaaggatttggatgatgcagtcgttgtatgg
aaactgccaaatggtaatttccatttgggtgtccacattgctgacgtctcacattatgcg
gttgaaggcacaccattagatgaagaggcttataatcgaggcacatctgtttatctaacg
gatcgtgtgattccaatgttgcctcgtaaaatttcaaatgggattgcttcattaaatcca
ggcgttgatcgactagctatgtcagctgaaatggagtttacaccaaaaggtaacttagtt
agtcaccgtctgcacacctcagtgatgcgatcacatgcgcggatgacttataaagcagtt
aatgcaatcttagatggtgatgaagagactcgttctgagtatgcggaactagtgccaatg
tttgaagagatggctgaattgcacgatattttgtcggcaaagcgtactgctagaggtgct
atcgagttcgatgcgcctgaggcaaagattattgttgatgaagagggtaagccaacggat
atcgaattgcgtgaacgtggtttatcagagcgaattattgaatcatttatgttagcagct
aatgaaactgttgccatgcattttgacctagctaaggtaccattcttgtatcgtatacac
gaagcaccagatgctgatcgtgtgcagagctttgttgattttgttaaagccttaggtgca
ccagttaaattggatcctgaaaacgtcaagtcaactgatttgcaagctattcataatttc
tttgtggatcgtcctgaagagcagatggtttcgacaatgatgttgcggacaatgaaacaa
gcaaagtattcaaatgatccattgggtcactttggtattggggcagaatattatacacac
ttcacttcaccaattcgacgttaccctgatttaacggttcatcgtttgattaaatggtac
gagaaaaatggtttgggtgaagaggcacaggctaagtatgccgataaattagcccaaatt
ggtgaggatacatcagttaaggaacgccgtgcggttgatactgaacgtgacactgatgca
atgaagaaggccgaattcatgatggataaggtcggccaagagttcgatggcgttgtgaat
ggtgttttgaagtttggcatgtttatttcgttggaaaacacggttgaaggtttgattcat
gtgtctaactttacggatgatcagtatgtctatgatgaagctcatatggcattgattggt
cgtcgcttgcaccacatttaccagattggtcaaccagttaaggtacgtgttgttcgtgtt
gataaagaacaagcatcgattgatttcgtattagttgatccagatgaagcaccagtcaca
gatattaaagtacctgatgaacatcgaggagcctttggtaaaaaccgtggtggacgtcgg
caacatgataagcgaaatcattcatcaaaggggaacaagacccataatgatggtaaagct
tttggcgcttatcaaaataagcgtaagccggattcaaaacatcaaggaactaatcgtaaa
ggacgtcataagtaa
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