Weissella jogaejeotgali: FOL01_0808
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Entry
FOL01_0808 CDS
T04632
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
wjo
Weissella jogaejeotgali
Pathway
wjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOL01_0808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wjo03019
]
FOL01_0808
03400 DNA repair and recombination proteins [BR:
wjo03400
]
FOL01_0808
Enzymes [BR:
wjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOL01_0808
Messenger RNA biogenesis [BR:
wjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOL01_0808
DNA repair and recombination proteins [BR:
wjo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FOL01_0808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Helicase_C_2
TniB
Motif
Other DBs
NCBI-ProteinID:
APS41667
UniProt:
A0A1L6RAS4
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All DBs
Position
881152..882594
Genome browser
AA seq
480 aa
AA seq
DB search
MAMINLDKILQAKFGFKTFKTGQKEILTALLAKQSTLAILPTGGGKTLIYQMMGAVRDGL
VIIVTPLLSLMQDQVARLNYLGEKNVIALNSTLTFENKKNVLKHLKQYHFLFISPEMLNQ
EQVQISLKQVPINLMVIDEVHTMVTWGQDFRPDYLALPAIHKQLDQPQLLLLTATATPSM
ITAIIENFRSVPEKWFVYQQPVDRPNIFLHTEQLPNELEKKQRLKDLLQTTSGPGVVYFT
SRKLATSMAEWLTNETGQRVVAYHAGMSTMARYRVQQQFMQGEIDVITATSAFGMGIDKE
NIRFVIHYHLSNDLSNYLQEIGRAGRDGQQSAAILLYVPGDESIQFNLIDQTIPDSYAIK
SYVEQSEVTILNPEQIRLLDFYKSNQLTTIEISRIFDNRRRIRQNNLLSMINYAKSDGQL
RHQISDYFGNETDGLSQTDESVGVTDWHSKELHLERKEDGKHQLKVLNWSKQLKKLFNLQ
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgattaacttagataaaattttacaagctaagtttggttttaaaacttttaaa
actggtcaaaaagaaattttaactgccttgttagccaaacaatcgacactagcaatttta
ccaacaggcggtggtaaaacactgatttatcaaatgatgggtgctgttcgagacggttta
gtgattattgtgacgccactactgtctttaatgcaggatcaagtggcccgtttgaattat
cttggtgaaaaaaatgtgattgctttgaactcaacattgacgtttgaaaataaaaagaat
gtcttaaagcacttaaaacaataccatttcttgttcatttcgcctgaaatgttaaatcaa
gagcaggtgcaaatatcattaaaacaagtgccaattaatttgatggttattgacgaggtc
cataccatggtgacgtggggacaagattttcgaccggactatcttgcattaccagccatt
cataagcaacttgatcagccgcagttactgttactaacggctacggcaacgccaagtatg
ataactgcaattattgaaaattttcgttctgtaccggaaaagtggtttgtctatcaacaa
cctgttgatcggccgaatatatttttgcatactgagcaattgccaaatgagttggagaaa
aaacaacgattaaaggatttgctacagacaacgagtggaccaggggtcgtttattttact
tcacgtaaattagcaacaagtatggctgaatggttaactaatgagactgggcagcgtgtt
gttgcctatcatgcggggatgagcacgatggctagataccgtgtgcaacaacagtttatg
caaggtgaaatcgatgttattacagcgacttcagcatttggtatgggaatcgataaagaa
aatattcgctttgtcattcattatcatttgagtaatgacctttcaaattatttgcaagaa
attggtcgtgcgggtcgtgatggtcaacaatcggcggcaattcttttatatgttcctggc
gatgaaagcattcagtttaatttgattgatcaaacgattccagattcatatgcaatcaaa
agttatgttgagcagtctgaggtgaccatattaaaccctgaacagataaggctattagat
ttttataaatctaatcagctcacaacgattgaaattagtcggatttttgataatcggcgg
cgcatcagacagaataatttgttatcaatgatcaattatgcaaaatctgatggtcagttg
cgtcatcaaatcagcgattattttggtaatgaaacagatggtttatcgcaaactgacgaa
agtgtgggtgtgacagactggcattcaaaagaattgcacttagaaagaaaagaagatggc
aaacatcagttaaaggtgttaaattggtctaaacagttaaaaaaactatttaatttacag
taa
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