Weissella jogaejeotgali: FOL01_1240
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Entry
FOL01_1240 CDS
T04632
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
wjo
Weissella jogaejeotgali
Pathway
wjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOL01_1240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wjo03019
]
FOL01_1240
Messenger RNA biogenesis [BR:
wjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FOL01_1240
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
APS42099
UniProt:
A0A1L6RC12
LinkDB
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Position
complement(1309812..1311710)
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AA seq
632 aa
AA seq
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MATTLDIMPFGGVRENGMNMYAVTVDEDIFILDAGLKYPESDLLGVDVVIPDYAYLVEHA
DNVAGVFLTHGHADAIGALPYLLSDLQVPVFGSELTIELAKLAIHNEPGLKDYDDYHIVK
GNSEVRFGNVTVSFFETTHTIPESLGIVIETSVGQVVYTGDFKLDTTALPYYQTDLLRLA
EIGQKGVVALLADAAGTAHIGTPDHESVLGDYILENFHLHKSGRIIVAAVASNIQRIQQV
VDAAYKVGRKVVISGNDLEKVVRTALRLKKLILPIPENEMFVSLKNLSKLPADETVILET
GRMGEPIRHLQRIAHGDDRNIKIQPGDLVFITTTPSTAMEGYVAKTRDMLFRAGATVKQI
STDKKSSGHASKDDFQLMLNLLKPQNVIPVQGEYRVLNEAYRAAEQVGYDDDHVFLLAKG
DKLRWNGEKFYLGGSIQVTSTMIDGSGVGDIGSIVLNDRRILSEDGVFIAVITIDRKKKK
VIAPAKIDSRGFVYVKTSRDLMHEAAELVEQTVSEGVKNTKDFDWGNLKNSVRDALGKFL
YEKTRRKPVILPVIMEANQNGRRRRRTSSHQGNKSKTVGTKPAKKQSNKKNPSKNTDKKS
GVKAANHKPNKPRRQRKNHKSNKQVKQTADTK
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggcaactacattagacattatgccgtttggtggtgtacgtgaaaatggaatgaacatg
tacgccgtgacggtcgatgaagacatatttattttagatgcagggttgaaatatcctgaa
agtgacttattaggggtggatgttgttatcccggattatgcttacttagttgagcatgct
gataacgtcgctggcgtatttttgacacatggtcacgcagatgcgattggcgccttgcct
tatctgttatcagatttgcaagttcccgtatttggttcagaattgacgattgaattggct
aaattagctattcataatgaacctggcctaaaagactatgacgattatcatatcgtgaaa
ggaaattctgaagttagatttggtaatgtcacagtttctttttttgaaacgacacataca
attcctgaatcgttgggtattgttattgaaacatcagttggtcaagtggtttatactggt
gattttaagctagatacaacagcattgccatattatcaaacagatttattgcgtttggca
gaaattggtcaaaaaggtgttgttgcattattagctgatgcagctggaactgctcatatt
ggtacgccagatcatgaatctgtactaggtgattacattctagaaaatttccacttacac
aaatctggtcgtataattgtcgccgcagtcgcatctaatattcaacgtattcaacaggtt
gttgatgctgcgtataaagttggtcgaaaagttgttatttcgggcaatgatttagagaag
gttgtgcgaactgctttacgtttgaaaaagttaatattacctatacctgaaaatgaaatg
tttgtttctcttaaaaacttgtcaaagttacctgctgatgaaacggttattttagaaaca
ggtcgtatgggagaaccaattcgtcatttgcagcgtattgcccatggtgatgaccgtaat
attaaaattcaacctggtgacttggtatttatcaccacgacaccatctactgcgatggag
ggttatgttgcgaaaacacgtgacatgttatttagagcaggggctacggtaaaacaaatc
tctactgacaaaaaatcttcgggacacgcatccaaagatgactttcagttaatgttgaat
ttgttgaagccgcaaaacgttattcctgtccaaggggaatatcgtgttttaaatgaagca
taccgggcagcagaacaagttggttatgatgatgatcacgtatttttactggctaaaggt
gataagttacgctggaatggtgaaaaattctatcttggtggctcaattcaagtaacgtca
acaatgattgatggttctggggttggcgatattggttcgattgttttgaatgatcgacgg
attttatctgaggatggtgtctttattgcggttattacaattgatcgtaaaaagaaaaag
gttatcgcaccagcgaaaattgattcgcgtggtttcgtttacgtgaagacgtcacgtgat
ttaatgcatgaagcggcagaattggttgaacaaactgtttccgaaggagttaagaataca
aaggatttcgactggggtaatttgaaaaactcagtgcgtgatgctttaggaaaattcttg
tatgaaaagacaaggcgtaagccagttattttgccagttatcatggaggcaaatcagaat
ggccgtcgtcgtcgtcgaacatcatcacatcaaggtaataaaagcaagacggttggtact
aaaccggccaaaaaacaatctaataaaaaaaatccgtcaaaaaatactgataaaaagtcc
ggcgtaaaagcagctaatcataagccgaataaacctcgtcggcaacgaaaaaatcataaa
tcaaataagcaagtaaaacagactgctgatacgaaataa
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